Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D04
(445 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19210.1 68417.m02834 RNase L inhibitor protein, putative sim... 214 3e-56
At3g13640.1 68416.m01718 RNase L inhibitor protein, putative sim... 207 2e-54
At1g18790.1 68414.m02342 RWP-RK domain-containing protein contai... 32 0.15
At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa s... 30 0.61
At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa s... 30 0.61
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 30 0.81
At4g18050.1 68417.m02686 ABC transporter family protein contains... 29 1.9
At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transfera... 28 3.3
At5g06530.2 68418.m00737 ABC transporter family protein 27 4.3
At5g06530.1 68418.m00736 ABC transporter family protein 27 4.3
At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam pr... 27 4.3
At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit, c... 27 5.7
At3g25620.1 68416.m03189 ABC transporter family protein similar ... 27 5.7
At3g13220.1 68416.m01654 ABC transporter family protein contains... 27 5.7
At2g01620.1 68415.m00088 expressed protein 27 5.7
At5g64840.1 68418.m08157 ABC transporter family protein 27 7.5
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR... 27 7.5
At5g09930.1 68418.m01148 ABC transporter family protein 27 7.5
At2g29690.1 68415.m03609 anthranilate synthase, alpha subunit, c... 27 7.5
At2g04680.1 68415.m00478 DC1 domain-containing protein contains ... 27 7.5
At5g52860.1 68418.m06561 ABC transporter family protein 26 10.0
At5g49740.1 68418.m06159 ferric reductase-like transmembrane com... 26 10.0
At5g13750.1 68418.m01600 transporter-related 26 10.0
At4g27420.1 68417.m03941 ABC transporter family protein D.melano... 26 10.0
At4g12740.1 68417.m02001 adenine-DNA glycosylase-related / MYH-r... 26 10.0
At3g52310.1 68416.m05749 ABC transporter family protein contains... 26 10.0
At3g47750.1 68416.m05202 ABC transporter family protein probable... 26 10.0
At3g21430.1 68416.m02704 expressed protein 26 10.0
At1g32730.1 68414.m04036 expressed protein 26 10.0
>At4g19210.1 68417.m02834 RNase L inhibitor protein, putative
similar to 68 kDa protein HP68 GI:16755057 from
[Triticum aestivum]
Length = 605
Score = 214 bits (522), Expect = 3e-56
Identities = 94/117 (80%), Positives = 106/117 (90%)
Frame = +3
Query: 93 DKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICV 272
D+LTRIAIV++DRCKPK+CRQECKKSCPVV+ GKLCIEVT K+A ISEELCIGCGICV
Sbjct: 3 DRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTVGSKLAFISEELCIGCGICV 62
Query: 273 KKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTA 443
KKCPF+AI IIN+P +LEK TTHRY N+FKLHRLP+PRPG+VLGLVG NGIGKSTA
Sbjct: 63 KKCPFEAIQIINLPRDLEKDTTHRYGANTFKLHRLPVPRPGQVLGLVGTNGIGKSTA 119
>At3g13640.1 68416.m01718 RNase L inhibitor protein, putative
similar to 68 kDa protein HP68 GI:16755057 from
[Triticum aestivum]
Length = 603
Score = 207 bits (506), Expect = 2e-54
Identities = 93/118 (78%), Positives = 102/118 (86%)
Frame = +3
Query: 90 TDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGIC 269
+D+LTRIAIV+ DRCKPK+CRQECKKSCPVV+ GKLCIEV K A ISEELCIGCGIC
Sbjct: 2 SDRLTRIAIVSEDRCKPKKCRQECKKSCPVVKTGKLCIEVGSTSKSAFISEELCIGCGIC 61
Query: 270 VKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTA 443
VKKCPF+AI IIN+P +L K TTHRY N FKLHRLPIPRPG+VLGLVG NGIGKSTA
Sbjct: 62 VKKCPFEAIQIINLPKDLAKDTTHRYGANGFKLHRLPIPRPGQVLGLVGTNGIGKSTA 119
>At1g18790.1 68414.m02342 RWP-RK domain-containing protein contains
Pfam profile: PF02042 RWP-RK domain
Length = 269
Score = 32.3 bits (70), Expect = 0.15
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 135 KPKRCRQECKKSCPVVR-MGKLCIEVTPNDKIATISEELCIGCGICVKKC 281
K +RCR+EC SC V + + K I + I + EL IG + K+C
Sbjct: 110 KKRRCREECFSSCSVSKTLSKETISLYFYMPITQAARELNIGLTLLKKRC 159
>At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial (TYKY) identical to SP|Q42599
NADH-ubiquinone oxidoreductase 23 kDa subunit,
mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
(CI-28.5KD) {Arabidopsis thaliana}
Length = 222
Score = 30.3 bits (65), Expect = 0.61
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 240 EELCIGCGICVKKCPFDAITI 302
EE CI C +C CP AITI
Sbjct: 120 EERCIACKLCEAVCPAQAITI 140
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 249 CIGCGICVKKCPFDAI 296
CI CG C + CP DAI
Sbjct: 162 CIYCGFCQEACPVDAI 177
>At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial, putative very strong similarity
to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial precursor (EC 1.6.5.3) (EC
1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
(CI-28.5KD) {Arabidopsis thaliana}; contains Pfam
profile PF00037: iron-sulfur cluster-binding protein
Length = 222
Score = 30.3 bits (65), Expect = 0.61
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 240 EELCIGCGICVKKCPFDAITI 302
EE CI C +C CP AITI
Sbjct: 120 EERCIACKLCEAVCPAQAITI 140
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 249 CIGCGICVKKCPFDAI 296
CI CG C + CP DAI
Sbjct: 162 CIYCGFCQEACPVDAI 177
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 29.9 bits (64), Expect = 0.81
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = -1
Query: 334 VCFS--KFDGILMMVIASKGHFFTQIPHPIHSSSEMVAILS---LGVTSMHSLPIRTTGQ 170
+CFS K + +L + + G + HP SSS MV I + L ++H L + G
Sbjct: 2061 ICFSSVKSNAVLAVSLRGDGVCAQNLRHPTGSSSPMVGITAYKPLSKDNVHCLVLHDDGS 2120
Query: 169 LFLHS 155
L ++S
Sbjct: 2121 LQIYS 2125
>At4g18050.1 68417.m02686 ABC transporter family protein contains Pfam
profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1281
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Frame = +3
Query: 288 DAITIINIPSNLE-KHTTHRYS-KNSFKLHR---LPIPRPGEVLGLVGQNGIGKST 440
+ T+ N+ ++E +H + RY + ++ R L IP G+ + LVG++G GKST
Sbjct: 982 EGTTLQNVNGDIEFRHVSFRYPMRPDVQIFRDLCLTIPS-GKTVALVGESGSGKST 1036
>At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 490
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 301 SSIFHQIWRNTPLIVIPRILSNFTGYQFHVLEKCLG 408
+SI +W PL+ P + FT + V + C+G
Sbjct: 373 NSILESVWCGLPLLCYPLLTDQFTNRKLVVDDWCIG 408
>At5g06530.2 68418.m00737 ABC transporter family protein
Length = 691
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PGEVL L+G +G GK+T
Sbjct: 189 PGEVLALMGPSGSGKTT 205
>At5g06530.1 68418.m00736 ABC transporter family protein
Length = 751
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PGEVL L+G +G GK+T
Sbjct: 189 PGEVLALMGPSGSGKTT 205
>At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam
profile: PF00005 ABC transporters; similar to TAP1
protein (transporter of processed antigen) GB:AAD53033
(Oncorhynchus mykiss); identical to cDNA transporter
associated with antigen processing-like protein (TAP1)
GI:19335721
Length = 700
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PGEV+ +VG +G GKST
Sbjct: 482 PGEVVAIVGLSGSGKST 498
>At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit,
component I-1 (ASA1) identical to SP|P32068
Length = 595
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 308 IDDGDRVKGAFLYTNTAPNTQFFRDGRYFIIG 213
+ + DR +FL+ + P +Q GRY ++G
Sbjct: 101 VKEDDREAPSFLFESVEPGSQMSSVGRYSVVG 132
>At3g25620.1 68416.m03189 ABC transporter family protein similar to
GB:AAC61893 from [Bactrocera tryoni] (Insect Mol. Biol.
6 (4), 343-356 (1997))
Length = 467
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 381 IPRPGEVLGLVGQNGIGKST 440
I +PGE+L ++G +G GK+T
Sbjct: 106 IVKPGELLAMLGPSGSGKTT 125
>At3g13220.1 68416.m01654 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter; similar to white
protein GB:Q27256 [Anopheles gambiae]
Length = 685
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PGE+L L+G +G GK+T
Sbjct: 116 PGEILALMGPSGSGKTT 132
>At2g01620.1 68415.m00088 expressed protein
Length = 292
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 159 CKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFDAITII 305
C K C VRM C + N K + C GC +C+ +C A+ ++
Sbjct: 173 CPK-CDEVRMIPSCSRESCNQK-----QRKCRGCWLCIPRCAECAVCLV 215
>At5g64840.1 68418.m08157 ABC transporter family protein
Length = 692
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 393 GEVLGLVGQNGIGKST 440
GE +GLVG NG GK+T
Sbjct: 123 GEKVGLVGVNGAGKTT 138
>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1353
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 266 NTAPNTQFFRDGRYFIIGCYFDAQFAH 186
+T+P+ FFR + ++GC QF++
Sbjct: 1191 HTSPSQPFFRFKAFAVVGCKSSGQFSY 1217
>At5g09930.1 68418.m01148 ABC transporter family protein
Length = 678
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
+ GE +GL+G NG GK+T
Sbjct: 107 KKGEKVGLIGVNGAGKTT 124
>At2g29690.1 68415.m03609 anthranilate synthase, alpha subunit,
component I-2 (ASA2) identical to SP|P32069
Length = 621
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -3
Query: 308 IDDGDRVKGAFLYTNTAPNTQFFRDGRYFIIGCYFDAQFAHTHNWATLL 162
+ + DR +FL+ + P +Q GRY ++G + N T++
Sbjct: 116 VKEDDRDAPSFLFESVEPGSQSSNIGRYSVVGAQPTIEIVAKGNVVTVM 164
>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 213 VLLRCTVCPYAQLGNSSCIPVDIFLVCNDPHLL 115
VL RC C Y GN + P + D HLL
Sbjct: 516 VLFRCDECDYILDGNCALFPKKVMRNRYDDHLL 548
>At5g52860.1 68418.m06561 ABC transporter family protein
Length = 589
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 357 SFKLHRLPIP-RPGEVLGLVGQNGIGKST 440
SF L + + P E+L +VG +G GKST
Sbjct: 42 SFILRNITLTAHPTEILAVVGPSGAGKST 70
>At5g49740.1 68418.m06159 ferric reductase-like transmembrane
component family protein similar to ferric-chelate
reductase (FRO1) [Pisum sativum] GI:15341529; contains
Pfam profile PF01794: Ferric reductase like
transmembrane componenent
Length = 747
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 30 VSPTFALLSAVMSRKRDNEE 89
++P FA+LS ++ RKRD ++
Sbjct: 470 ITPFFAILSDILHRKRDGKD 489
>At5g13750.1 68418.m01600 transporter-related
Length = 478
Score = 26.2 bits (55), Expect = 10.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 234 WSLFYHWVLLRCTVCPYAQL 175
W LF W+++ CT P + L
Sbjct: 36 WELFTVWIIVLCTALPISSL 55
>At4g27420.1 68417.m03941 ABC transporter family protein
D.melanogaster P element CaSpeR-1 gene (white
protein),PID:g870996
Length = 639
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 381 IPRPGEVLGLVGQNGIGKST 440
I +PGE+L ++G +G GK++
Sbjct: 74 IVKPGEILAMLGPSGSGKTS 93
>At4g12740.1 68417.m02001 adenine-DNA glycosylase-related /
MYH-related similar to MYH (GI:18845094) [Rattus
norvegicus]; similar to adenine-DNA glycosylase
(GI:12656850) [Mus musculus]; contains TIGRFAM profile
TIGR01084: A/G-specific adenine glycosylase (hits below
the trusted cutoff)
Length = 630
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 81 NEETDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKL 197
NEE D TR +N + R E KK+C +V +L
Sbjct: 430 NEEADSATRRNAINVYLKEAFRFHVELKKACTIVSREEL 468
>At3g52310.1 68416.m05749 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 737
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PGE+L L+G +G GK+T
Sbjct: 177 PGELLALMGPSGSGKTT 193
>At3g47750.1 68416.m05202 ABC transporter family protein probable
transport protein ABC-C, Homo sapiens, PIR2:S71363
Length = 944
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PGE G++G NG GK++
Sbjct: 652 PGECFGMLGPNGAGKTS 668
>At3g21430.1 68416.m02704 expressed protein
Length = 961
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 67 PENEIMRKQINLPVSL**MRIVANQKDVDRNARRVAQLCV 186
P N +++KQ+NLP + R + +K + + ++++ V
Sbjct: 360 PSNAVIKKQVNLPTKVRSRRKIVTEKPLTIDDGKISETIV 399
>At1g32730.1 68414.m04036 expressed protein
Length = 327
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 168 SCPVVRMGKLCIEVTPNDKIATISEELCIGCG-ICVKKCPFDA 293
S P + L VTP + +++ CI CG + +CPF +
Sbjct: 4 SSPSLSNNGLSSVVTPPKTLRGLNKPKCIQCGNVARSRCPFQS 46
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,545,602
Number of Sequences: 28952
Number of extensions: 234017
Number of successful extensions: 833
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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