Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D03
(488 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23) 181 3e-46
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_52932| Best HMM Match : Ank (HMM E-Value=0) 30 1.2
SB_10243| Best HMM Match : Ank (HMM E-Value=0) 30 1.2
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 28 4.7
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 28 4.7
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 28 4.7
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 28 4.7
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14) 28 4.7
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 27 6.3
>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
Length = 145
Score = 181 bits (440), Expect = 3e-46
Identities = 84/106 (79%), Positives = 96/106 (90%)
Frame = +1
Query: 37 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 216
RGRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++A
Sbjct: 23 RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLA 82
Query: 217 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 354
TVKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N V V +
Sbjct: 83 TVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 30.7 bits (66), Expect = 0.67
Identities = 30/114 (26%), Positives = 43/114 (37%)
Frame = -1
Query: 392 ATGPVIAEPFISPLLFTMTPALSSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFLTVA 213
A+G I P PL T +PAL S P + CLI +T++L S +
Sbjct: 552 ASGAPIRAPI--PLKETPSPALESSPAAMPDATDTAWTCLI----VTYYLESEALHVAAG 605
Query: 212 TIMSPEPAAGNLFRRPLIPCTAITYRFFAPVLSAQLITAPTGRPSEMRNFAPAE 51
S G + + TA F PV+S + + S RN P +
Sbjct: 606 ARRSGRRLRGADAGKRGVYATAANVLFAMPVMSGLASRPNSAQSSAFRNTMPVD 659
>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
Length = 1266
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 85 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 177
L +GA ++CADN G L +A QG +N
Sbjct: 913 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943
>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
Length = 475
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 85 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 177
L +GA ++CADN G L +A QG +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 137 RFFAPVLSAQLITAPTGRPSEMRNFAPAEP-PRPL 36
R + P L + AP+G P++ + APA P PRPL
Sbjct: 283 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 316
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 137 RFFAPVLSAQLITAPTGRPSEMRNFAPAEP-PRPL 36
R + P L + AP+G P++ + APA P PRPL
Sbjct: 287 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 320
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 137 RFFAPVLSAQLITAPTGRPSEMRNFAPAEP-PRPL 36
R + P L + AP+G P++ + APA P PRPL
Sbjct: 963 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 996
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 137 RFFAPVLSAQLITAPTGRPSEMRNFAPAEP-PRPL 36
R + P L + AP+G P++ + APA P PRPL
Sbjct: 1092 RAYTPALPT-IPMAPSGAPAKTPSVAPAAPSPRPL 1125
>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 182 NLFRRPLIPCTAITYRFFAPVLSAQLITAPTGRPSEMRNFAPAEPPR 42
+L R L P + YR A V + ++AP RP RN EP R
Sbjct: 15 HLLNRDLRPASTTPYRSRATVTRTRPLSAPPSRP-PWRNPGSPEPKR 60
>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
Length = 865
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 137 RFFAPVLSAQLITAPTGRPSEMRNFAPAEP-PRPL 36
R + P L + AP+G P++ + APA P PRPL
Sbjct: 805 RAYTPALPT-IPQAPSGAPAKTLSVAPAAPSPRPL 838
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -1
Query: 182 NLFRRPLIPCTAITYRFFAPVLSAQLITAPTGRPSEMRNFAPAEPPRP 39
+LF++ T T AP L + APT P ++ AP PP P
Sbjct: 67 SLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPP 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,741,658
Number of Sequences: 59808
Number of extensions: 380972
Number of successful extensions: 1045
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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