Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D03
(488 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-3487|AAF46914.1| 140|Drosophila melanogaster CG3661-PA... 263 1e-70
M85295-1|AAA28867.1| 140|Drosophila melanogaster ribosomal prot... 248 2e-66
BT030159-1|ABN49298.1| 363|Drosophila melanogaster IP17715p pro... 31 0.85
AE013599-2351|AAF57949.1| 366|Drosophila melanogaster CG15615-P... 31 0.85
U43733-1|AAA86639.1| 904|Drosophila melanogaster Abrupt protein. 30 2.0
BT003807-1|AAO41490.1| 369|Drosophila melanogaster AT11330p pro... 30 2.0
BT001583-1|AAN71338.1| 894|Drosophila melanogaster RE25924p pro... 30 2.0
AE014134-2051|AAN10774.1| 894|Drosophila melanogaster CG4807-PB... 30 2.0
AE014134-2050|AAF53087.2| 904|Drosophila melanogaster CG4807-PA... 30 2.0
AE014296-669|AAF47779.2| 942|Drosophila melanogaster CG14973-PA... 29 2.6
Z11527-1|CAA77616.1| 614|Drosophila melanogaster CYS3HIS finger... 29 3.4
BT021256-1|AAX33404.1| 608|Drosophila melanogaster RE58038p pro... 29 3.4
AE014297-3282|AAO41594.1| 599|Drosophila melanogaster CG4620-PB... 29 3.4
AE014297-3281|AAO41593.1| 599|Drosophila melanogaster CG4620-PA... 29 3.4
AY051587-1|AAK93011.1| 523|Drosophila melanogaster GH23377p pro... 28 7.9
AE014134-2961|AAF53691.1| 784|Drosophila melanogaster CG10383-P... 28 7.9
>AE013599-3487|AAF46914.1| 140|Drosophila melanogaster CG3661-PA
protein.
Length = 140
Score = 263 bits (644), Expect = 1e-70
Identities = 124/131 (94%), Positives = 127/131 (96%)
Frame = +1
Query: 28 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 207
MSKRGRGG+AG KFRISLGLPVGAV+NCADNTGAKNLYVIAV GI+GRLNRLPAAG GDM
Sbjct: 1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDM 60
Query: 208 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 387
VATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 388 VAKECADLWPR 420
VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131
>M85295-1|AAA28867.1| 140|Drosophila melanogaster ribosomal protein
L17A protein.
Length = 140
Score = 248 bits (608), Expect = 2e-66
Identities = 118/131 (90%), Positives = 121/131 (92%)
Frame = +1
Query: 28 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 207
MSKRGRGG+AG KFRISLGLPVGAV+NCADNTGAKNLYVIAV GI+GRLNRLPAAG GDM
Sbjct: 1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDM 60
Query: 208 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 387
VATVKKGKPELRKKV RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 FVATVKKGKPELRKKVSVVPSARQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 388 VAKECADLWPR 420
VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131
>BT030159-1|ABN49298.1| 363|Drosophila melanogaster IP17715p
protein.
Length = 363
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 306 PVPPSKWFPLPDHHCWHY 253
PV S+WFP PDHH H+
Sbjct: 266 PVVISEWFPSPDHHDHHH 283
>AE013599-2351|AAF57949.1| 366|Drosophila melanogaster CG15615-PA
protein.
Length = 366
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 306 PVPPSKWFPLPDHHCWHY 253
PV S+WFP PDHH H+
Sbjct: 269 PVVISEWFPSPDHHDHHH 286
>U43733-1|AAA86639.1| 904|Drosophila melanogaster Abrupt protein.
Length = 904
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/59 (44%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 332 ALSSKYMNTPSRLLNG-FRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLF-RRPL 162
A+ N P LL G F AG F SG P LT+ IM E AAGNL RPL
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842
>BT003807-1|AAO41490.1| 369|Drosophila melanogaster AT11330p
protein.
Length = 369
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/59 (44%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 332 ALSSKYMNTPSRLLNG-FRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLF-RRPL 162
A+ N P LL G F AG F SG P LT+ IM E AAGNL RPL
Sbjct: 250 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 307
>BT001583-1|AAN71338.1| 894|Drosophila melanogaster RE25924p
protein.
Length = 894
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/59 (44%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 332 ALSSKYMNTPSRLLNG-FRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLF-RRPL 162
A+ N P LL G F AG F SG P LT+ IM E AAGNL RPL
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832
>AE014134-2051|AAN10774.1| 894|Drosophila melanogaster CG4807-PB,
isoform B protein.
Length = 894
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/59 (44%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 332 ALSSKYMNTPSRLLNG-FRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLF-RRPL 162
A+ N P LL G F AG F SG P LT+ IM E AAGNL RPL
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832
>AE014134-2050|AAF53087.2| 904|Drosophila melanogaster CG4807-PA,
isoform A protein.
Length = 904
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/59 (44%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 332 ALSSKYMNTPSRLLNG-FRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLF-RRPL 162
A+ N P LL G F AG F SG P LT+ IM E AAGNL RPL
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842
>AE014296-669|AAF47779.2| 942|Drosophila melanogaster CG14973-PA
protein.
Length = 942
Score = 29.5 bits (63), Expect = 2.6
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
Frame = -1
Query: 332 ALSSKYMNTPSRLLNGFRCLITTAGI---TFFLSSGLPFLTVATIMSPEPA--AGNLFRR 168
++ S Y TP +L NG+ T + T S+ LP ATI+ P+ +RR
Sbjct: 726 SMDSGYKTTPQQLTNGYPEKSTEDSLSPKTDITSNSLPENPSATIVPPKKTEMCTTYYRR 785
Query: 167 PLIPCTAITYRFFAPVLSAQLITAPTGRPSEMRNFAPAEPPRPLLDILLCQIFP 6
+ Y + A ++P G + + A P +P DIL + +P
Sbjct: 786 TTRSGLPVAY---TTIAGAPDDSSPPGESTSSGSEALICPEQPTCDILNYKYYP 836
>Z11527-1|CAA77616.1| 614|Drosophila melanogaster CYS3HIS finger
protein protein.
Length = 614
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 274 RQRKPFRRRDGVFIYFEDN 330
R+R+P R+RDG F Y DN
Sbjct: 72 RRRRPVRKRDGTFNYSADN 90
>BT021256-1|AAX33404.1| 608|Drosophila melanogaster RE58038p
protein.
Length = 608
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 274 RQRKPFRRRDGVFIYFEDN 330
R+R+P R+RDG F Y DN
Sbjct: 66 RRRRPVRKRDGTFNYSADN 84
>AE014297-3282|AAO41594.1| 599|Drosophila melanogaster CG4620-PB,
isoform B protein.
Length = 599
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 274 RQRKPFRRRDGVFIYFEDN 330
R+R+P R+RDG F Y DN
Sbjct: 57 RRRRPVRKRDGTFNYSADN 75
>AE014297-3281|AAO41593.1| 599|Drosophila melanogaster CG4620-PA,
isoform A protein.
Length = 599
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 274 RQRKPFRRRDGVFIYFEDN 330
R+R+P R+RDG F Y DN
Sbjct: 57 RRRRPVRKRDGTFNYSADN 75
>AY051587-1|AAK93011.1| 523|Drosophila melanogaster GH23377p
protein.
Length = 523
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 129 KKSVCDCRTRYQGSSEQVTSCW 194
K SVC R Q +SE+ T+CW
Sbjct: 226 KFSVCGSEWRNQDTSEEYTNCW 247
>AE014134-2961|AAF53691.1| 784|Drosophila melanogaster CG10383-PA
protein.
Length = 784
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 129 KKSVCDCRTRYQGSSEQVTSCW 194
K SVC R Q +SE+ T+CW
Sbjct: 487 KFSVCGSEWRNQDTSEEYTNCW 508
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,774,736
Number of Sequences: 53049
Number of extensions: 591392
Number of successful extensions: 2134
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2134
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -