Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D03
(488 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.3
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 2.3
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 3.1
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 3.1
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 22 4.0
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 4.0
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 4.0
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 21 5.3
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 21 5.3
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 21 5.3
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 5.3
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 5.3
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 21 7.0
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 21 7.0
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 21 7.0
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 21 7.0
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 21 7.0
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 21 9.3
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 9.3
AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein. 21 9.3
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.3
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3
Query: 288 WFPLPDHHC 262
WFP D HC
Sbjct: 117 WFPFDDQHC 125
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.3
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3
Query: 288 WFPLPDHHC 262
WFP D HC
Sbjct: 117 WFPFDDQHC 125
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.3
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3
Query: 288 WFPLPDHHC 262
WFP D HC
Sbjct: 117 WFPFDDQHC 125
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.3
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3
Query: 288 WFPLPDHHC 262
WFP D HC
Sbjct: 117 WFPFDDQHC 125
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.3
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3
Query: 288 WFPLPDHHC 262
WFP D HC
Sbjct: 117 WFPFDDQHC 125
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.3
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3
Query: 288 WFPLPDHHC 262
WFP D HC
Sbjct: 117 WFPFDDQHC 125
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 2.3
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3
Query: 288 WFPLPDHHC 262
WFP D HC
Sbjct: 185 WFPFDDQHC 193
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 2.3
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = -3
Query: 288 WFPLPDHHC 262
WFP D HC
Sbjct: 185 WFPFDDQHC 193
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.6 bits (46), Expect = 2.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y + N Q+P+ P CG PR
Sbjct: 336 LYYNIINIEQIPVPVPVYCGNFPPR 360
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 3.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 77 RWVSQWEL*SIVQIIQEQK 133
R+VSQWE I+Q +Q+++
Sbjct: 227 RYVSQWEEVYILQNLQKKR 245
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.2 bits (45), Expect = 3.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y + N Q+P+ P CG PR
Sbjct: 334 LYYNIINIEQIPVPVPIYCGNFPPR 358
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 21.8 bits (44), Expect = 4.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 118 YLHN*SQLPLGDPARCGTSLPR 53
Y+ N Q+P+ P CG PR
Sbjct: 109 YIINIEQIPVPVPIYCGNFPPR 130
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.8 bits (44), Expect = 4.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 19 HNKMSKRGRGGSAG 60
H K RGRGG+ G
Sbjct: 86 HGKGGSRGRGGNRG 99
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 4.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 118 YLHN*SQLPLGDPARCGTSLPR 53
Y+ N Q+P+ P CG PR
Sbjct: 350 YIINIEQIPVPVPIYCGNFPPR 371
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 109 LYYNINYIEQIPIPVPVYCGNFPPR 133
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 130 LLLYYLHN*SQLPLGDPARCGTSLPR 53
L Y + N Q+P+ P CG PR
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPR 133
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 130 LLLYYLHN*SQLPLGDPARCGTSLPR 53
L Y + N Q+P+ P CG PR
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPR 133
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 130 LLLYYLHN*SQLPLGDPARCGTSLPR 53
L Y + N Q+P+ P CG PR
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPR 133
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 130 LLLYYLHN*SQLPLGDPARCGTSLPR 53
L Y + N Q+P+ P CG PR
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPR 133
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 130 LLLYYLHN*SQLPLGDPARCGTSLPR 53
L Y + N Q+P+ P CG PR
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPR 133
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 130 LLLYYLHN*SQLPLGDPARCGTSLPR 53
L Y + N Q+P+ P CG PR
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPR 133
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 5.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 130 LLLYYLHN*SQLPLGDPARCGTSLPR 53
L Y + N Q+P+ P CG PR
Sbjct: 112 LQYYNIINIEQIPVPVPIYCGNFPPR 137
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 130 LLLYYLHN*SQLPLGDPARCGTSLPR 53
L Y + N Q+P+ P CG PR
Sbjct: 108 LQYYNIINIEQIPVPVPIYCGNFPPR 133
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 109 LYYNINYIEQIPIPVPVYCGNFPPR 133
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 109 LYYNINYIEQIPIPVPVYCGNFPPR 133
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 109 LYYNINYIEQIPIPVPVYCGNFPPR 133
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 109 LYYNINYIEQIPIPVPVYCGNFPPR 133
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 109 LYYNINYIEQIPIPVPVYCGNFPPR 133
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 109 LYYNINYIEQIPIPVPVYCGNFPPR 133
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 109 LYYNINYIEQIPIPVPVYCGNFPPR 133
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 5.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 109 LYYNINYIEQIPIPVPVYCGNFPPR 133
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 5.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 342 LYYNINYIEQIPIPVPVYCGNFPPR 366
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 5.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 342 LYYNINYIEQIPIPVPVYCGNFPPR 366
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 21.0 bits (42), Expect = 7.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 297 PSKWFPLPDHHCWHYLF 247
PSK + LPD+ YL+
Sbjct: 245 PSKEYDLPDYRGEEYLY 261
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 21.0 bits (42), Expect = 7.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 297 PSKWFPLPDHHCWHYLF 247
PSK + LPD+ YL+
Sbjct: 245 PSKEYDLPDYRGEEYLY 261
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 107 LYYNINYIEQIPIPVPIYCGNFPPR 131
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 107 LYYNINYIEQIPIPVPIYCGNFPPR 131
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 127 LLYYLHN*SQLPLGDPARCGTSLPR 53
L Y ++ Q+P+ P CG PR
Sbjct: 107 LYYNINYIEQIPIPVPIYCGNFPPR 131
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 20.6 bits (41), Expect = 9.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 195 TSSW*PVQTTLDTLYGNHIQIFCS 124
T++ P+ +T T+ NH+ CS
Sbjct: 327 TTTTSPMTSTKSTIVRNHLNSTCS 350
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 20.6 bits (41), Expect = 9.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 100 VINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSG 201
+IN +++ G K AV+ +N A+GSG
Sbjct: 571 IINSSNDEGGKTSPNSAVRKCMSPINGSGASGSG 604
>AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein.
Length = 388
Score = 20.6 bits (41), Expect = 9.3
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -1
Query: 326 SSKYMNTPSRLLNGFRCLITTAGI 255
+ KY N P L F TAG+
Sbjct: 215 NDKYSNVPYFLFGDFNFRTDTAGV 238
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,006
Number of Sequences: 438
Number of extensions: 3866
Number of successful extensions: 41
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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