Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D03
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi...   239   9e-64
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)           239   9e-64
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden...   239   9e-64
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ...    53   9e-08
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ...    53   9e-08
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si...    49   2e-06
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ...    29   1.7  
At1g12910.1 68414.m01499 flower pigmentation protein (AN11) cont...    28   2.9  
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea...    28   3.9  
At2g43490.1 68415.m05404 RabGAP/TBC domain-containing protein si...    28   3.9  
At4g10360.1 68417.m01701 expressed protein                             27   5.1  
At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein ...    27   5.1  
At3g10880.1 68416.m01310 hypothetical protein                          27   6.8  
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ...    27   6.8  

>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
           to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
           tabacum]
          Length = 140

 Score =  239 bits (584), Expect = 9e-64
 Identities = 106/131 (80%), Positives = 124/131 (94%)
 Frame = +1

Query: 28  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 207
           MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A  GDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 208 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 387
           ++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 388 VAKECADLWPR 420
           + KECADLWPR
Sbjct: 121 IGKECADLWPR 131


>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
          Length = 140

 Score =  239 bits (584), Expect = 9e-64
 Identities = 106/131 (80%), Positives = 124/131 (94%)
 Frame = +1

Query: 28  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 207
           MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A  GDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 208 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 387
           ++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 388 VAKECADLWPR 420
           + KECADLWPR
Sbjct: 121 IGKECADLWPR 131


>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
           identical to GB:AAB80655
          Length = 140

 Score =  239 bits (584), Expect = 9e-64
 Identities = 106/131 (80%), Positives = 124/131 (94%)
 Frame = +1

Query: 28  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 207
           MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A  GDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 208 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 387
           ++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 388 VAKECADLWPR 420
           + KECADLWPR
Sbjct: 121 IGKECADLWPR 131


>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
           huellenlos paralog (HLP) contains Pfam profile PF00238:
           Ribosomal protein L14p/L23e; identical to cDNA
           HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
           product GU:18140859
          Length = 172

 Score = 53.2 bits (122), Expect = 9e-08
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
 Frame = +1

Query: 85  LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 255
           + +G V+   DN+GAK   V+ +Q +KG+      A  GD IVA+VK+  P  + K   V
Sbjct: 47  IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 100

Query: 256 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 399
           +  VV+R      R DG  + F+DNA V+V++K +         G+ + GPV  E
Sbjct: 101 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 155


>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
           huellenlos paralog (HLP) contains Pfam profile PF00238:
           Ribosomal protein L14p/L23e; identical to cDNA
           HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
           product GU:18140859
          Length = 173

 Score = 53.2 bits (122), Expect = 9e-08
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
 Frame = +1

Query: 85  LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 255
           + +G V+   DN+GAK   V+ +Q +KG+      A  GD IVA+VK+  P  + K   V
Sbjct: 48  IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 101

Query: 256 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 399
           +  VV+R      R DG  + F+DNA V+V++K +         G+ + GPV  E
Sbjct: 102 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 156


>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
           similar to GB:Z98756 from (Mycobacterium leprae)
          Length = 196

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
 Frame = +1

Query: 85  LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKV--- 255
           + +G ++ C DN+ AK   V+ +Q ++G+      A  GD+IV +VK+  P ++KKV   
Sbjct: 49  IQMGTILKCVDNSCAKE--VMCIQSLRGK----KGARLGDIIVGSVKEANPIVQKKVKKD 102

Query: 256 -MP-----------AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 369
            +P            VV+R   P  R DG  + F+DNA V+V  K E KG
Sbjct: 103 AIPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVVGIK-EKKG 151


>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
           similar to PR-1a protein [Nicotiana tabacum] GI:19944;
           contains Pfam profile PF00188: SCP-like extracellular
           protein
          Length = 164

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = -3

Query: 369 AFHLPLVVHDDPRIILEIYEHP-----VPPSKWFPLPDHHCWHY 253
           AF +PL   D P+  L+ +        VPP KW    + + W+Y
Sbjct: 18  AFAVPLKAQDQPQDYLDEHNRARTQVGVPPMKWHAGAEQYAWNY 61


>At1g12910.1 68414.m01499 flower pigmentation protein (AN11)
           contains 3 WD-40 repeats (PF00400); identical to
           GB:AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11
           (11), 1422-1434 (1997))
          Length = 346

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 348 VHDDPRIILEIYEHPVPPSKWFPLPDHHC 262
           +  DP +    +EHP PP+K   +PD  C
Sbjct: 70  IRSDPNLS---FEHPYPPTKTIFIPDKEC 95


>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400);
           similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
           (Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
           profile: PF00400 WD domain, G-beta repeat (3 copies)
          Length = 346

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 348 VHDDPRIILEIYEHPVPPSKWFPLPDHHC 262
           +  DP +    +EHP PP+K   +PD  C
Sbjct: 70  IRSDPNLC---FEHPYPPTKTSFIPDKEC 95


>At2g43490.1 68415.m05404 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 756

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 108 IDHSSHWETQRDAELRSRG---TTTSSFRH 28
           I H +H E+QR  E++S G   + T SF H
Sbjct: 719 IQHQTHMESQRPEEIQSHGENQSQTPSFHH 748


>At4g10360.1 68417.m01701 expressed protein
          Length = 266

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 365 FISPLLFTMTPALSSKY-MNTPSRLLNGFRCLITTAGITFFL 243
           FISPLLF++   L SK  M   +R  + F  + T+    +FL
Sbjct: 37  FISPLLFSVYGKLDSKVRMEWNNRGFSTFHAVFTSVASIYFL 78


>At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein
           (FLA8)
          Length = 420

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = -1

Query: 284 FRCLITTAGITFFLSSGL-PFLTVATIMSPEPAAGNLFRRPLIPCTAI-TYRFFAPVLSA 111
           F    +T+G    L +G+ P     T++   P         L+P       +  +P  + 
Sbjct: 285 FDLTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELFGKSKSPSPAPAP 344

Query: 110 QLITAPTGRPSEMRNFAPAEPPRPLLD 30
           + +TAPT  P++  +   A PP P  D
Sbjct: 345 EPVTAPTPSPADAPSPTAASPPAPPTD 371


>At3g10880.1 68416.m01310 hypothetical protein
          Length = 278

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 141 IQIFCSCIICTIDHSSHWETQRDAELRSRGTTTSSFRHFVVSNFSS 4
           +++ CS ++ ++   S ++  +  +L S GT+ SS  H VVS  SS
Sbjct: 36  LKLPCS-LVTSMGALSTFKPDKSPDLESGGTSYSSLNHQVVSTTSS 80


>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 612

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 284 FRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTA 147
           +RCLI +  +    ++ LP LT+    S   +   L R  L+PC A
Sbjct: 143 YRCLICSFCLDLSCAATLPLLTITNPKSHHHSLVFLPRPLLVPCDA 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,683,514
Number of Sequences: 28952
Number of extensions: 263522
Number of successful extensions: 748
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)