Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D02
(395 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 28 0.60
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 27 1.4
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 3.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 4.3
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 25 5.6
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 25 5.6
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 5.6
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.6
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 5.6
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 24 7.4
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 24 7.4
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 24 7.4
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 24 9.8
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 24 9.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 24 9.8
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.9 bits (59), Expect = 0.60
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 113 DAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPE 220
D VE+ DAA E ++ E K+ KKS +KK + P+
Sbjct: 29 DGKVEENDAAEEGASNGEKKKKKKKKS-SKKKKTPQ 63
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 89 KKKIRNKELKLQHVLRTTQNNVH 21
KKK++NKE+ LQ +L T + H
Sbjct: 46 KKKLKNKEIDLQAILTTHHHADH 68
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 3.2
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 119 AVEKQDAAPEEVTSTEVKE--SPIKKSPTKKTEVPESN 226
AV++ P+ + + KE S + SPT+K++ E+N
Sbjct: 538 AVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENN 575
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 4.3
Identities = 22/94 (23%), Positives = 29/94 (30%)
Frame = -3
Query: 390 SVASSSTTVDFLFTPVSLTSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPLLSGT 211
S+ASSSTT L + +S P S T
Sbjct: 118 SLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSAT 177
Query: 210 SVFLVGDFLIGDSLTSVEVTSSGAASCFSTAASA 109
S L +S TS + SS S S A++
Sbjct: 178 SSSL-SSTAASNSATSSSLASSSLNSTTSATATS 210
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 24.6 bits (51), Expect = 5.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 145 GCGVLLFNCCVCHYYY*VSKRKLEIKN*NYST 50
G VL N +C YY V + E+ N +Y T
Sbjct: 82 GIDVLWLNSGICQSYYTVMEAPEEVWNAHYQT 113
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 158 STEVKESPI-KKSPTKKTEVPESNGKENG 241
S+EVKE +K+ ++ + P+ +G+ENG
Sbjct: 222 SSEVKEEEAGEKTDVEEKKDPDKHGRENG 250
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 144 PKR*LPRKSRNLQLRNLPPKKLKYLRAMV 230
P+R + RN + RN P L YL M+
Sbjct: 53 PRRRRMNRRRNERSRNFPSNHLSYLEDMI 81
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 24.6 bits (51), Expect = 5.6
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 116 AAVEKQ-DAAPEEVTSTEVKESPIKKSPTKKTEVPES 223
A +EK + APE V T SP++ + K T+V +S
Sbjct: 309 APLEKPVNLAPEVVEPTNAAASPLQLNAPKLTDVDDS 345
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 24.6 bits (51), Expect = 5.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 164 EVKESPIKKSPTKK 205
E +ESP+K PTKK
Sbjct: 892 ETRESPMKNKPTKK 905
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 24.2 bits (50), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 238 VLFTIALRYFSFFGGRFLNWRFLDFRGSH 152
VLFT+ S F G FL W F F G++
Sbjct: 322 VLFTVPSNRRSLFIGCFLQW-FQQFSGTN 349
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 134 DAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKE 235
D PE+ + + P+KK P+KK++ ++N E
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFE 90
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 185 KKSPTKKTEVPESNGK 232
KK+ K+ EVP SNGK
Sbjct: 73 KKTEFKQDEVPNSNGK 88
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 23.8 bits (49), Expect = 9.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 125 EKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGT 244
E + PEE + EVK K+P + ES KE T
Sbjct: 213 EVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKT 252
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 293 EESNDATENGDVTEVKETGVKRKSTVVEEE 382
E+SN A NG+ T GV + S V++E
Sbjct: 52 EDSNKANGNGEETTDGAEGVLQTSEEVDDE 81
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 125 EKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKE 235
EK E V S + K+SP E+P ++G +
Sbjct: 582 EKPSKLKETVESKRLSTGVQKQSPAASKEIPVTSGSQ 618
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,251,224
Number of Sequences: 5004
Number of extensions: 17660
Number of successful extensions: 84
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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