Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D01
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    67   2e-12
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   2.0  
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    26   4.7  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.2  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   8.2  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 30/62 (48%), Positives = 47/62 (75%)
 Frame = +2

Query: 281 KKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQ 460
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P V+K+  ++ YIV G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 461 QA 466
           QA
Sbjct: 84  QA 85


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 442 LRLSKYYVSVRVWVLEDIRIVDHKEYVL*FPYCNSVYTLYKLEAKFAHD 296
           LR+S YY S  ++     ++ D   YVL FP+ N+    Y+ E K  +D
Sbjct: 255 LRMSLYYDSNELFK----KMTDDLNYVLKFPFDNTRGNEYEKEQKIRND 299


>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPYV 132
           P P  ++ +  PG C  + C +++  PYV
Sbjct: 134 PFPHSKIIIVSPGICTKDICFKREQEPYV 162


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 19/72 (26%), Positives = 27/72 (37%)
 Frame = +3

Query: 42  KGLIPLCHKKSQNMPELTEPR*SHCINERRNVRKRLLPQTVIQMTPSRNLKMQAHLGQGV 221
           K LI +C+  S+N      P  S   N  R +   +            ++K   + GQG 
Sbjct: 95  KQLINICNSPSKNHETSLSPSKSTIDNNERKLDNEI-------DNYKHDVKYSPYKGQGK 147

Query: 222 FLTPSQALISCP 257
              PSQ    CP
Sbjct: 148 TSNPSQGTTKCP 159


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 102 EVLLVQACFGIFCDKVELIPFIKIRNFGGQPASC 1
           E+L++++   I  +KVE++PF+ IR +      C
Sbjct: 471 EILVLKS--SIEKEKVEIVPFLDIRKYSPNEVLC 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,622
Number of Sequences: 5004
Number of extensions: 45744
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)