Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D01
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098          111   3e-25
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...   105   3e-23
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821...    30   1.6  
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559...    29   2.7  
10_08_0171 + 15404117-15405598                                         28   4.8  
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722...    27   8.4  
03_02_0624 + 9935479-9935619,9935780-9935887                           27   8.4  

>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
          Length = 221

 Score =  111 bits (268), Expect = 3e-25
 Identities = 53/109 (48%), Positives = 72/109 (66%)
 Frame = +2

Query: 260 AKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEA 439
           +KQSR EKK+RK M KLG+K V GV+R+TI+++KNILFV++ PDVFK+P S+TY++FGEA
Sbjct: 75  SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134

Query: 440 KIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAEEEHEEGVD 586
           KIEDLS Q    AA++F+                      EE  E G++
Sbjct: 135 KIEDLSSQLQAQAAQQFRMQDLSKVMSKPDAAAAAPADEEEEVDETGIE 183


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score =  105 bits (251), Expect = 3e-23
 Identities = 58/105 (55%), Positives = 71/105 (67%), Gaps = 19/105 (18%)
 Frame = +2

Query: 236 AGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKN----------------- 364
           AG D   ++KQSR EKK+RK M KLG+K + GV+RVTI+KSKN                 
Sbjct: 50  AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109

Query: 365 --ILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQQATMAAAERFK 493
             ILFVI+ PDVFK+P+SDTY++FGEAKIEDLS Q    AAE+FK
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFK 154


>08_02_0952 -
           22981116-22981268,22981930-22981974,22982052-22982153,
           22983262-22983468,22984783-22985042,22985338-22985442,
           22986244-22986247,22986877-22986962,22987022-22987064
          Length = 334

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 417 VSECGFLKTSGLLITKSMFFDFLIVTLFTPCTSLRPSL 304
           V + G L  SG  +TK++FF+FL   +    T+L  SL
Sbjct: 236 VGDFGILVRSGFTVTKALFFNFLSALVALAGTALALSL 273


>06_03_0813 -
           24853119-24854480,24854711-24855442,24855556-24855962,
           24856091-24856359,24856681-24856733,24857019-24857078,
           24857309-24857363,24858080-24858155,24858225-24858801
          Length = 1196

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +2

Query: 128 EKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIVSKAKQSRGEKKARKIMS 304
           E  KEE          +I  +E+ G  GA    + + G    S    SRG   AR+IMS
Sbjct: 589 ESEKEEEERMSVIPSGSIRMMEEDGGAGAPSSEDTVGGSGSGSGRGSSRGGGGAREIMS 647


>10_08_0171 + 15404117-15405598
          Length = 493

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 245 DIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTI 349
           +I + A++ +  KKARK+M + G+K V G + + +
Sbjct: 412 NIYAVARRWQEAKKARKVMEERGVKKVPGFSEIDV 446


>03_06_0090 +
           31570588-31570710,31570962-31571080,31572215-31572284,
           31572544-31573492,31574789-31575699
          Length = 723

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 141 KRLLPQTVIQMTPSRNLKMQAHLGQGVFLTPSQALISCPKQSSLV 275
           ++ L +TVI   P   +K  AH G  V  T ++ L    + +S++
Sbjct: 370 QKALLETVIANLPEETIKSNAHTGTAVGATTARVLFGLLRTTSIL 414


>03_02_0624 + 9935479-9935619,9935780-9935887
          Length = 82

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 436 LSKYYVSVRVWVLEDIRIVDHKEYVL 359
           L +   S+R++   DI +VDHK Y+L
Sbjct: 26  LPRRLFSIRIFRYSDIPLVDHKRYLL 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,811,769
Number of Sequences: 37544
Number of extensions: 323034
Number of successful extensions: 870
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)