Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D01
(587 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_20371| Best HMM Match : U-box (HMM E-Value=0.075) 30 1.2
SB_20928| Best HMM Match : NHL (HMM E-Value=0) 29 3.7
SB_54654| Best HMM Match : rve (HMM E-Value=0.0035) 28 4.9
SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 27 8.6
SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15) 27 8.6
SB_53279| Best HMM Match : rve (HMM E-Value=5.2e-36) 27 8.6
SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35) 27 8.6
SB_49675| Best HMM Match : rve (HMM E-Value=5.2e-36) 27 8.6
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 8.6
SB_33553| Best HMM Match : DUF101 (HMM E-Value=3.7) 27 8.6
SB_30405| Best HMM Match : rve (HMM E-Value=5.1e-07) 27 8.6
SB_19549| Best HMM Match : DUF101 (HMM E-Value=3.7) 27 8.6
SB_15390| Best HMM Match : rve (HMM E-Value=5.2e-36) 27 8.6
SB_10309| Best HMM Match : rve (HMM E-Value=9.6e-32) 27 8.6
SB_1714| Best HMM Match : rve (HMM E-Value=9.6e-32) 27 8.6
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_35114| Best HMM Match : RVT_1 (HMM E-Value=2.2e-11) 27 8.6
SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 8.6
SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21) 27 8.6
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36) 27 8.6
SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18) 27 8.6
>SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 30.7 bits (66), Expect = 0.92
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +3
Query: 222 FLTPSQALISCPKQSSLVARRRRAK 296
F TP+++L+SC + S +++R+RR K
Sbjct: 55 FATPNRSLMSCTESSPILSRQRRTK 79
>SB_20371| Best HMM Match : U-box (HMM E-Value=0.075)
Length = 515
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 301 EQTWPQACTRCKQSYNKEIKEHTLCDQQS*CLQEPTLGHLHSIWRGEDRGSVTASHY 471
E T P + CK SY KE EH + + ++ P G H++ + +V H+
Sbjct: 451 EMTKPMSSKNCKHSYEKEAIEHMIKKSRVKSVRCPISGCPHTLTLNDLEVNVELEHH 507
>SB_20928| Best HMM Match : NHL (HMM E-Value=0)
Length = 795
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 262 CFGHDINA-CDGVRNTPCPRCACIFKFRDG 176
C +++ C+G N CP+C F RDG
Sbjct: 38 CLSEELHRDCEGRLNVTCPKCLRDFPLRDG 67
>SB_54654| Best HMM Match : rve (HMM E-Value=0.0035)
Length = 466
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 141 KRLLPQTVIQMTPSRNLKMQAHLGQGVFLTPSQALISCPKQSS 269
+ +L + ++ P +N++ QGV + AL++CP + +
Sbjct: 47 EHILSEKGVEADPEKNIEPDVKYAQGVHQNAAGALVTCPDKQA 89
>SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +2
Query: 227 NPIAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNP 406
N ID ++ + +G +K K+ SKL L V + K +LF+ N+ ++ +N
Sbjct: 119 NNFVSIDDLNYYTKPQGLEKVAKLESKLVPSLHLFVTMTNLNPVKLVLFLNNHMELVEN- 177
Query: 407 HSDTYIVFGEAKIEDLSQQATM 472
+ V G K E +Q+TM
Sbjct: 178 YKAVNKVLG-LKAESCIKQSTM 198
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 786 PLYQLHESLCHPGVTRLNHFVRTKNLPY 813
>SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15)
Length = 615
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 383 PLYQLHESLCHPGVTRLNHFVRTKNLPY 410
>SB_53279| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 337
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 70 PLYQLHESLCHPGVTRLNHFVRTKNLPY 97
>SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)
Length = 1208
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +2
Query: 296 IMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQQATMA 475
IM+ L + G T S I ++++NP V H + V G LSQ+ +
Sbjct: 1058 IMAGLATLFLAGSETTTTTLSWAIAYLLHNPGVQARLHKEIDQVIGRDVSPKLSQRKNIP 1117
Query: 476 AAERF 490
E F
Sbjct: 1118 VLEAF 1122
>SB_49675| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 412
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 55 PLYQLHESLCHPGVTRLNHFVRTKNLPY 82
>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 998
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 833 PLYQLHESLCHPGVTRLNHFVRTKNLPY 860
>SB_33553| Best HMM Match : DUF101 (HMM E-Value=3.7)
Length = 252
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 215 PLYQLHESLCHPGVTRLNHFVRTKNLPY 242
>SB_30405| Best HMM Match : rve (HMM E-Value=5.1e-07)
Length = 409
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 244 PLYQLHESLCHPGVTRLNHFVRTKNLPY 271
>SB_19549| Best HMM Match : DUF101 (HMM E-Value=3.7)
Length = 225
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 188 PLYQLHESLCHPGVTRLNHFVRTKNLPY 215
>SB_15390| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 748
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 388 PLYQLHESLCHPGVTRLNHFVRTKNLPY 415
>SB_10309| Best HMM Match : rve (HMM E-Value=9.6e-32)
Length = 546
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 215 PLYQLHESLCHPGVTRLNHFVRTKNLPY 242
>SB_1714| Best HMM Match : rve (HMM E-Value=9.6e-32)
Length = 517
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 215 PLYQLHESLCHPGVTRLNHFVRTKNLPY 242
>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 934 PLYQLHESLCHPGVTRLNHFVRTKNLPY 961
>SB_35114| Best HMM Match : RVT_1 (HMM E-Value=2.2e-11)
Length = 512
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 343 PLYQLHESLCHPGVTRLNHFVRTKNLPY 370
>SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 809 PLYQLHESLCHPGVTRLNHFVRTKNLPY 836
>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 870
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 833 PLYQLHESLCHPGVTRLNHFVRTKNLPY 860
>SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21)
Length = 1032
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 449 PLYQLHESLCHPGVTRLNHFVRTKNLPY 476
>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1677
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 817 PLYQLHESLCHPGVTRLNHFVRTKNLPY 844
>SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18)
Length = 1046
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 218 PLPQVRLHLQVPGWCHLNHCLRKQSLPY 135
PL Q+ L PG LNH +R ++LPY
Sbjct: 229 PLYQLHESLCHPGVTRLNHFVRTKNLPY 256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,931,610
Number of Sequences: 59808
Number of extensions: 365352
Number of successful extensions: 1076
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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