Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D01
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical ...   124   5e-29
AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...   124   5e-29
U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    33   0.20 
AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z70684-4|CAA94599.1|  234|Caenorhabditis elegans Hypothetical pr...    29   3.2  
L17337-1|AAP68928.1|  593|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z22177-1|CAA80151.1|  578|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical ...    27   7.5  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    27   7.5  
U49947-7|AAA93425.2|  382|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5a protein.
          Length = 195

 Score =  124 bits (299), Expect = 5e-29
 Identities = 62/85 (72%), Positives = 69/85 (81%)
 Frame = +2

Query: 239 GIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDT 418
           G  I  +AKQSR EKKARK+ SKLGLK V GV+RV IRKSKNILFVIN PDVFK+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 419 YIVFGEAKIEDLSQQATMAAAERFK 493
           YI+FGEAKIEDL+Q A M+A E  K
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLK 130


>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score =  124 bits (299), Expect = 5e-29
 Identities = 62/85 (72%), Positives = 69/85 (81%)
 Frame = +2

Query: 239 GIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDT 418
           G  I  +AKQSR EKKARK+ SKLGLK V GV+RV IRKSKNILFVIN PDVFK+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 419 YIVFGEAKIEDLSQQATMAAAERFK 493
           YI+FGEAKIEDL+Q A M+A E  K
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLK 130


>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 19/82 (23%), Positives = 38/82 (46%)
 Frame = +2

Query: 215 GGISNPIAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDV 394
           GG   P     ++ K   +  +KK +  + KL +  + G+  V + K    +   NNP V
Sbjct: 23  GGKGTPRRKKKVIHKTAAA-DDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKV 81

Query: 395 FKNPHSDTYIVFGEAKIEDLSQ 460
             +  ++T+ V G A  + +++
Sbjct: 82  QTSVPANTFSVTGSADNKQITE 103


>AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical
           protein M03F8.5 protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 233 IAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINN 385
           I G+D  S+A+  R  KK   ++ +LG  +    N+V    + N+L +  N
Sbjct: 205 ILGLDSTSRAQFGRNMKKTSGLLDRLGSVVFNAYNKVGDNSAVNMLPIFAN 255


>Z70684-4|CAA94599.1|  234|Caenorhabditis elegans Hypothetical
           protein F28D1.4 protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -2

Query: 280 LATRLLCFGH--DINACDGVRNTP--CPRCACIFKFRD 179
           +A +  C G+  D   C GVRNTP  C R     KF+D
Sbjct: 167 VACKFGCVGYNTDEECCRGVRNTPETCDRSTTAQKFKD 204


>L17337-1|AAP68928.1|  593|Caenorhabditis elegans Hypothetical
           protein ZK686.2 protein.
          Length = 593

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 325 YKLEAKFAHDFARLLLATRLLCFGHDINACDGVRNTPCPRCACIFKFRDG 176
           YK+  KF  +  R+L+ + +L  G D+N  D V N   P    +F  R G
Sbjct: 439 YKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAG 488


>Z22177-1|CAA80151.1|  578|Caenorhabditis elegans Hypothetical
           protein ZK512.2 protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = -2

Query: 436 LSKYYVSVRV-----WVLEDIRIVDHKEYVL*FPYCNSVYTLYKL 317
           L  YYV  R        LE IR    K+ ++ FP CNSV   YK+
Sbjct: 232 LKNYYVECRADEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKI 276


>AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical
           protein C16A11.3 protein.
          Length = 726

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 69  KSQNMPELTE-PR*SHCINERRNVRKRLLPQTVIQMTPSRNLKMQAHLGQGVF 224
           K QN  E+ +  R S   NE     +  LP+  I  +    LK+ A LG+GVF
Sbjct: 349 KEQNPSEIKKIRRKSETDNENVAGNRENLPKNPILTSSGAQLKIIAKLGEGVF 401


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 430  WRGEDRGSVTASHYGSGREVQGTGNCC 510
            ++GE  G    +H+GS REV GT   C
Sbjct: 978  YQGERCGECAQNHWGSPREVGGTCERC 1004


>U49947-7|AAA93425.2|  382|Caenorhabditis elegans Hypothetical
           protein C30G4.6 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 19  TEISNFYKRD*FHFVTK-NPKTCLN*QNLD 105
           T +   +KRD  +   + NPK C+  QNLD
Sbjct: 54  TSLKTNFKRDGLYLTVRDNPKLCMTTQNLD 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,120,402
Number of Sequences: 27780
Number of extensions: 265870
Number of successful extensions: 760
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)