Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C24
         (457 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q44LR8 Cluster: Putative uncharacterized protein precur...    36   0.55 
UniRef50_A4KUD2 Cluster: TlmJ; n=3; Pseudonocardiaceae|Rep: TlmJ...    32   5.1  
UniRef50_Q47LM4 Cluster: Putative uncharacterized protein; n=1; ...    32   6.7  

>UniRef50_Q44LR8 Cluster: Putative uncharacterized protein
           precursor; n=1; Chlorobium limicola DSM 245|Rep:
           Putative uncharacterized protein precursor - Chlorobium
           limicola DSM 245
          Length = 443

 Score = 35.5 bits (78), Expect = 0.55
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 332 FAASAAHATNTTLNKSRIVLSERGRGNIRYLRYPQP 225
           F  SA HAT  T     + L+ RG+GN++ LR P+P
Sbjct: 175 FEQSADHATRRTGEPVTLALTVRGKGNLQTLRIPEP 210


>UniRef50_A4KUD2 Cluster: TlmJ; n=3; Pseudonocardiaceae|Rep: TlmJ -
           Streptoalloteichus hindustanus
          Length = 399

 Score = 32.3 bits (70), Expect = 5.1
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -3

Query: 269 ERGRGNIRYLRYPQPLPADHCSSFKRFFKDIRIGGAARDIA*TNIYTQFMNFSLFGY 99
           ++G   +  LR P PLPA H SS+  +F  +R+  + RD     +Y + + ++ F Y
Sbjct: 274 DQGLSTVDGLRCPPPLPAGHTSSY--YFYWVRMDASVRDAMARRLYDRGV-YTTFRY 327


>UniRef50_Q47LM4 Cluster: Putative uncharacterized protein; n=1;
           Thermobifida fusca YX|Rep: Putative uncharacterized
           protein - Thermobifida fusca (strain YX)
          Length = 716

 Score = 31.9 bits (69), Expect = 6.7
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -3

Query: 374 GGASAADLNVPSNFFAASAAHATNTT-LNKSRIVLSERGRGNIRYLRYPQPLPADHCSS 201
           GG SA   + P+  FA     A +   LN+    + +  RG ++    P P P  H  S
Sbjct: 18  GGVSARTCDAPTGLFAPLVRFAASRPILNRREYGIRDEARGGVQPFAAPLPAPGQHPES 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,675,004
Number of Sequences: 1657284
Number of extensions: 7777807
Number of successful extensions: 17942
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17935
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)