Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C24
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    27   1.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   2.4  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   5.5  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   5.5  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    25   7.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   9.6  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -1

Query: 358 LILMFPQISLQLQPRTPLTLHLIKAALYCLREAVATFVI*GIHNRYPLTTARPSKDFSRI 179
           L ++ P  SL++ P TPLT  +     +    A A   +    N Y   T  P  + ++I
Sbjct: 373 LQVLTPNSSLKVDPTTPLTAPIHATESFWPSAAAAAAAVHNNANSYMPITPTPYPNNAKI 432

Query: 178 F 176
           F
Sbjct: 433 F 433


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 171 YTNILEKSFEGRAVVSG*RLWIPQITNVATASLRQYNAAF 290
           Y  I EKSF      S  R W   ITNV++  L+  NA F
Sbjct: 143 YQLISEKSFLWDLYASFMRYWKYYITNVSSIVLQITNATF 182


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 272  SERGRGNIRYLRYP--QPLPADHCSSFKRFFKDIRIGGAARDIA*TNIYTQF 123
            ++ G+  IRY  YP  +PL +    +  +F  + R+   A D A  +I+  F
Sbjct: 938  ADMGKHTIRYAVYPHSKPLDSSTVRAAHKFNSNFRLLTRASDTANLDIFDAF 989


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 172 IRISLKNLLKDEQWSAGSGCGYLR 243
           +RI L N L+ E W   SG  Y R
Sbjct: 217 VRIELPNKLRGEIWELTSGSMYFR 240


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 235 IHNRYPLTTARPSKDFSRIFV*GVRHVI*LKLISTRSS*TFHCSDITGG 89
           I  +YPLT    ++  +++F+ G+   I  K+   R++   HCS +  G
Sbjct: 174 IEEKYPLTAVAIAQQGTQVFIGGIDGAI--KIWDLRNN---HCSHVLKG 217


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 400  PIRQLGCLEVEHQRLILMFPQISLQLQPRTPLTLHLIKA 284
            P + +   +V    L+  F ++SLQLQ +      LIKA
Sbjct: 1396 PRKPIPAKDVRVSSLVRRFEELSLQLQEKQKRDEELIKA 1434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,111
Number of Sequences: 5004
Number of extensions: 29810
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)