Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C24
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1412 + 33383566-33383904,33383964-33383972                       29   1.8  
11_06_0253 - 21716164-21717144                                         29   2.3  
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157...    29   2.3  
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    27   5.4  
10_06_0078 + 10416950-10417174,10417595-10417679,10417782-104179...    27   7.2  
02_05_0816 + 31986370-31987662                                         27   9.5  

>04_04_1412 + 33383566-33383904,33383964-33383972
          Length = 115

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 44  WSATIAARFMPRTVPPACDIR 106
           W AT+AA   PRT P A D+R
Sbjct: 5   WRATVAAAATPRTDPVAADLR 25


>11_06_0253 - 21716164-21717144
          Length = 326

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 11  GLQEFGTRRDTWSA---TIAARFMPRTVPPA 94
           GL+EF TRRD W+    T+  R  PR   PA
Sbjct: 167 GLKEFLTRRDAWAGTFDTVLTRAAPREDCPA 197


>07_01_0213 -
           1573315-1573485,1573583-1573765,1573858-1574046,
           1574182-1574263,1574315-1574421,1575086-1575161,
           1575457-1575637,1575711-1575828
          Length = 368

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 42  LGPRPSQRALCRGLCHPPVISEQ*K--VHELRVDISLSY 152
           +G + S    CR LC  PV+SE  K  V E+ +D+   Y
Sbjct: 284 MGSKGSSSEDCRSLCQFPVMSESEKKNVEEMLIDLLTKY 322


>02_05_0481 +
           29361542-29361669,29362091-29362341,29362820-29363002,
           29363099-29363206,29363583-29363697,29363781-29364819,
           29364904-29365014,29365268-29365326,29366601-29366763,
           29367162-29367435,29367530-29367680,29367766-29367877,
           29367978-29368143,29368261-29368331,29368474-29368565,
           29368721-29368883,29369134-29369205,29369236-29369263,
           29369519-29369910,29369991-29370106,29370201-29370498,
           29370820-29371139,29371332-29371590,29371985-29372302,
           29372423-29372527,29372648-29372776,29374001-29374381,
           29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 371 GASAADLNVPSN-FFAASAAHATNTTLNKSRIVLSERGRGNIRYLR 237
           GASA++LN PS  FF  SA       L  S+I+ +  G     Y+R
Sbjct: 153 GASASELNSPSGFFFGVSAISLAINMLFISKILFNGSGFDVDEYVR 198


>10_06_0078 +
           10416950-10417174,10417595-10417679,10417782-10417900,
           10418200-10418287,10419400-10419452,10419876-10420015,
           10420094-10420166,10420243-10420311,10420632-10420844,
           10422304-10422498,10422581-10422658,10423456-10423590
          Length = 490

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 397 IRQLGCLEVEHQRLILMFPQISLQLQPRTPL--TLHLIKAALYCLREAVATF 248
           I+ + C    + ++  +   +S +L P+ PL  +LH + A L C    +ATF
Sbjct: 333 IQAMSCAYSAYAKISAIMTSVSEEL-PKAPLFVSLHNLCATLKCTNPTIATF 383


>02_05_0816 + 31986370-31987662
          Length = 430

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 212 GQRVAVVDTSDNECCHGLSQTIQC 283
           G+RVA VD +D+   HG +Q   C
Sbjct: 384 GKRVAAVDVADDGSAHGTAQYPGC 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,510,442
Number of Sequences: 37544
Number of extensions: 244374
Number of successful extensions: 584
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)