Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C24
(457 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24810| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013) 28 4.2
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_29698| Best HMM Match : DUF1610 (HMM E-Value=4.6) 27 7.4
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) 27 7.4
SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11) 27 9.7
SB_33354| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_30856| Best HMM Match : TSP_1 (HMM E-Value=5.9e-09) 27 9.7
SB_26395| Best HMM Match : TSP_1 (HMM E-Value=3.5e-09) 27 9.7
SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0) 27 9.7
SB_51635| Best HMM Match : TLD (HMM E-Value=4.1e-06) 27 9.7
SB_50101| Best HMM Match : TLD (HMM E-Value=0.0014) 27 9.7
>SB_24810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 97 TGGWHSPRHKARCDGRGPSV 38
T GW S ++ C+GRGPSV
Sbjct: 273 TDGWSSASFRSGCNGRGPSV 292
>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
Length = 310
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 1 GSPGXAGIRHEARHLVRDHRSAL 69
G P +R + RH +DHRSAL
Sbjct: 228 GDPTLNAVREKQRHKTQDHRSAL 250
>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 41 TWSATIAARFMPRTVPPACDIRTVKS 118
TW TI + MP V P + T+KS
Sbjct: 463 TWGDTIRSALMPGCVTPTTSLATIKS 488
>SB_29698| Best HMM Match : DUF1610 (HMM E-Value=4.6)
Length = 739
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = -2
Query: 180 YSYRGCGT*YSLN*Y-LHAVHELFTVRISQAG----GTVLGIKRAAMVADQVSRLVPNSC 16
+ Y GCGT + + + LF + S G GI R + ADQ+ R++P +
Sbjct: 664 WKYAGCGTVHRVQGKTIQTPRRLFIIDHSLEGWITNAVYTGISRVRL-ADQIVRMIPPNN 722
Query: 15 XPG 7
PG
Sbjct: 723 TPG 725
>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1101
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +3
Query: 294 KCSVSGVRG*SCKEI*GNIKISR*CSTSRQPSCRIGFC*TSCRGC 428
+C++SG C ++ GN ++ CR GF + GC
Sbjct: 828 RCNMSGSADAQCDDVTGNCTCKNSTDGAKCAECRFGFYNFTSAGC 872
>SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11)
Length = 635
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 91 GWHSPRHKARCDGRGPSV 38
GW + +CDG+GP+V
Sbjct: 44 GWEAKTFHQKCDGKGPTV 61
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 91 GWHSPRHKARCDGRGPSV 38
GW + +CDG+GP+V
Sbjct: 232 GWEAKTFHQKCDGKGPTV 249
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 91 GWHSPRHKARCDGRGPSV 38
GW + +CDG+GP+V
Sbjct: 484 GWEAKTFHQKCDGKGPTV 501
>SB_33354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 91 GWHSPRHKARCDGRGPSV 38
GW + +CDG+GP+V
Sbjct: 44 GWEAKTFHQKCDGKGPTV 61
>SB_30856| Best HMM Match : TSP_1 (HMM E-Value=5.9e-09)
Length = 197
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 91 GWHSPRHKARCDGRGPSV 38
GW + +CDG+GP+V
Sbjct: 160 GWEAKTFHQKCDGKGPTV 177
>SB_26395| Best HMM Match : TSP_1 (HMM E-Value=3.5e-09)
Length = 250
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 91 GWHSPRHKARCDGRGPSV 38
GW + +CDG+GP+V
Sbjct: 24 GWEAKTFHQKCDGKGPTV 41
>SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 818
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 91 GWHSPRHKARCDGRGPSV 38
GW + +CDG+GP+V
Sbjct: 616 GWEAKTFHQKCDGKGPTV 633
>SB_51635| Best HMM Match : TLD (HMM E-Value=4.1e-06)
Length = 189
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 91 GWHSPRHKARCDGRGPSV 38
GW + +CDG+GP+V
Sbjct: 44 GWEAKTFHQKCDGKGPTV 61
>SB_50101| Best HMM Match : TLD (HMM E-Value=0.0014)
Length = 131
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 91 GWHSPRHKARCDGRGPSV 38
GW + +CDG+GP+V
Sbjct: 44 GWEAKTFHQKCDGKGPTV 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,790,845
Number of Sequences: 59808
Number of extensions: 276905
Number of successful extensions: 688
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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