Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C24
         (457 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970251-1|CAI96723.1|  131|Anopheles gambiae putative reverse t...    23   5.1  
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         23   6.7  
AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein p...    22   8.9  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    22   8.9  

>AJ970251-1|CAI96723.1|  131|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 131

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 206 SSGQRV--AVVDTSDNECCHGLSQTIQCGFY 292
           S+G +V   VV  S   CC  L  T Q GF+
Sbjct: 9   SAGAKVFEVVVQNSLLNCCRSLISTRQHGFF 39


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +1

Query: 148 AISRAAPPIRISLKNLLKDEQWSAGSGCGYLR 243
           ++ ++AP   +++ + L+ E+  A +G G +R
Sbjct: 84  SVGKSAPQFLLNVYDQLQQEETDAPAGAGRIR 115


>AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein
           protein.
          Length = 285

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 237 PQITNVATASLRQYNAAFIKC 299
           P IT    A  RQY   F KC
Sbjct: 182 PAITVTDQALARQYTVGFSKC 202


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 69  KRAAMVADQVSRLVPNSCXPGGS 1
           +RA  +AD  SRL+ N   P  S
Sbjct: 752 ERAGKIADATSRLLRNHSEPRAS 774


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,086
Number of Sequences: 2352
Number of extensions: 8198
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 39119412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)