Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C24
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z95619-2|CAB09114.1|  450|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively...    27   4.9  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical
           protein H21P03.3b protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 319 PRTPLTLHLIKAALYCLREAVATFVI*GIHNRYPLTTARPSKDFSRI 179
           P+TPL   L+   +  +  A  T  +  IH RYPLT   P   F  I
Sbjct: 179 PKTPLKT-LVAFLMLVVAAAGNTITLSWIHERYPLTPPLPDIVFELI 224


>Z95619-2|CAB09114.1|  450|Caenorhabditis elegans Hypothetical
           protein H21P03.3a protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 319 PRTPLTLHLIKAALYCLREAVATFVI*GIHNRYPLTTARPSKDFSRI 179
           P+TPL   L+   +  +  A  T  +  IH RYPLT   P   F  I
Sbjct: 139 PKTPLKT-LVAFLMLVVAAAGNTITLSWIHERYPLTPPLPDIVFELI 184


>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
           protein ZC504.4d protein.
          Length = 1072

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 23  FGTRRDTWSATIAARFMPRTVPPACDIRTVKS 118
           + +R D WS  I A  M    PP CD+  +++
Sbjct: 208 YDSRSDLWSLGITALEMAEGHPPLCDMHPMRA 239


>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
           protein ZC504.4c protein.
          Length = 1096

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 23  FGTRRDTWSATIAARFMPRTVPPACDIRTVKS 118
           + +R D WS  I A  M    PP CD+  +++
Sbjct: 208 YDSRSDLWSLGITALEMAEGHPPLCDMHPMRA 239


>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
           protein ZC504.4b protein.
          Length = 1082

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 23  FGTRRDTWSATIAARFMPRTVPPACDIRTVKS 118
           + +R D WS  I A  M    PP CD+  +++
Sbjct: 208 YDSRSDLWSLGITALEMAEGHPPLCDMHPMRA 239


>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
           protein ZC504.4a protein.
          Length = 1087

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 23  FGTRRDTWSATIAARFMPRTVPPACDIRTVKS 118
           + +R D WS  I A  M    PP CD+  +++
Sbjct: 208 YDSRSDLWSLGITALEMAEGHPPLCDMHPMRA 239


>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
           spliced serine/threonineprotein kinase MIG-15 protein.
          Length = 1087

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 23  FGTRRDTWSATIAARFMPRTVPPACDIRTVKS 118
           + +R D WS  I A  M    PP CD+  +++
Sbjct: 208 YDSRSDLWSLGITALEMAEGHPPLCDMHPMRA 239


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical protein
            F01G4.3 protein.
          Length = 1266

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -1

Query: 433  VVQPRQLVQQKPIR---QLGCLEVEHQRLILMFPQISLQLQPRTPLTLHLIKAALYC 272
            V++    V+QK +    ++GC E+ HQ L++    +  +   R+P  L  + + L C
Sbjct: 1081 VLEALNFVEQKMVSLKGRIGC-EIHHQELLITELILDYKFHQRSPAELAALLSTLTC 1136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,799,062
Number of Sequences: 27780
Number of extensions: 184740
Number of successful extensions: 352
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)