Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C23
         (482 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   0.85 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   3.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   4.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.9  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 349 PSVTSRKTIFGTGSEWWLLHMTHMSFATSTSMLIATMKTT 468
           P+ T ++T +     W+L H       T+T  L    +TT
Sbjct: 220 PTFTQQQTQYSQYGSWFLPHQPIYPAVTATVQLSTCTRTT 259


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 323 LKEVSQIPDQALPQEKQSSGLAPSGG 400
           L+E    PD+ LP ++++  L+P  G
Sbjct: 180 LREERCDPDRPLPLDQKARDLSPRNG 205


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = -3

Query: 267 DCPGYLFCLQL*HVLSSISQSCQHPGCYP-QQGVCS 163
           DC  Y  C+     L SI + C H   Y  +  +C+
Sbjct: 454 DCSVYYTCVSDGSKLVSIQRKCNHGLVYDLELNICN 489


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 179 SRVCAVNGKFKANLPLGTFAANFAT 105
           +R+ A  G+     P+GT A  F+T
Sbjct: 211 TRLSATKGRLVITEPVGTKAPAFST 235


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 222  KERVKVEGKTNNLGNHVVIARDKTKVAINADIP 320
            K  ++  G  N  GN+ V+AR+  + ++ + IP
Sbjct: 1484 KSHMQTLGAKNEYGNNNVVARNH-RNSVASSIP 1515


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 222  KERVKVEGKTNNLGNHVVIARDKTKVAINADIP 320
            K  ++  G  N  GN+ V+AR+  + ++ + IP
Sbjct: 1484 KSHMQTLGAKNEYGNNNVVARNH-RNSVASSIP 1515


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 222  KERVKVEGKTNNLGNHVVIARDKTKVAINADIP 320
            K  ++  G  N  GN+ V+AR+  + ++ + IP
Sbjct: 1484 KSHMQTLGAKNEYGNNNVVARNH-RNSVASSIP 1515


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 222  KERVKVEGKTNNLGNHVVIARDKTKVAINADIP 320
            K  ++  G  N  GN+ V+AR+  + ++ + IP
Sbjct: 1484 KSHMQTLGAKNEYGNNNVVARNH-RNSVASSIP 1515


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 432 SSEAHMSHVQKPPLGASPEDCF 367
           SSE     V+K P  AS  +CF
Sbjct: 160 SSERDYFSVKKLPSPASDSECF 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,320
Number of Sequences: 336
Number of extensions: 2101
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)