Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C23
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    85   5e-18
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    29   0.49 
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   4.5  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   6.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.9  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 85.0 bits (201), Expect = 5e-18
 Identities = 43/99 (43%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
 Frame = +3

Query: 141 ISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARD-KTKVAINADI 317
           +S K+ ID T    D I DV  FEKYL +R+KV+GKT NLG+ VV++R+  +K+A+ A I
Sbjct: 8   VSNKYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHI 67

Query: 318 PFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDSYELRYF 434
            FS                  DWLRVV++    YELRY+
Sbjct: 68  DFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = -2

Query: 271 T*LPRLFVLPSTLTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIF-LLAPLPRILPPFTP 95
           T +P+L  L   +T  +  F++    R+    G ++++  L ++F +L  L RI+ PFTP
Sbjct: 714 TVVPQLLGLIEEMTNWYIRFNR---RRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTP 770

Query: 94  FL 89
           F+
Sbjct: 771 FI 772


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 231  VKVEGKTNNLGNHVVIARDKTKVAINADIP 320
            +K+ G  NNL +++ +   +T++  + DIP
Sbjct: 1210 IKLVGMANNLNDNLELEEFRTRITNSMDIP 1239


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 334 ISNT*PSVTSRKTIFGT-GSEWWLLHMTHMSFATS 435
           I N     TS K +FG  G  WW+L +T   + T+
Sbjct: 180 ILNNGIKATSTKVLFGLLGLWWWMLFVTASFYHTT 214


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 195  DVGNFEKYLKERVKVEGKTNNLGNH 269
            + GN +KY +  +KV GK ++   H
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTH 979


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,415
Number of Sequences: 5004
Number of extensions: 33922
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)