Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C23
(482 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.008
SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05) 37 0.008
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 31 0.50
SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15) 30 0.87
SB_43215| Best HMM Match : ResIII (HMM E-Value=7.9) 30 1.1
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_55881| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05) 28 4.6
SB_28078| Best HMM Match : SGS (HMM E-Value=1.5) 28 4.6
SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38) 28 4.6
SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6) 28 4.6
SB_29335| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_1849| Best HMM Match : His_leader (HMM E-Value=6.2) 28 4.6
SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22) 27 6.1
SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39) 27 8.1
SB_8959| Best HMM Match : PAN (HMM E-Value=0.013) 27 8.1
>SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 381 DWLRVVASAHDSYELRYF 434
DWLRVVA+ H SYELRYF
Sbjct: 18 DWLRVVAADHTSYELRYF 35
>SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)
Length = 50
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 381 DWLRVVASAHDSYELRYF 434
DWLRVVA+ H SYELRYF
Sbjct: 18 DWLRVVAADHTSYELRYF 35
>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
Length = 430
Score = 31.1 bits (67), Expect = 0.50
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 223 KNVLKLKAKQITWAITLSSPGTRQKSLSTQTFPSQRG-ISNT*PSVT 360
K V K +Q+ AI + T+QK++ T+TFP R I NT +T
Sbjct: 146 KPVKKTNVEQVLRAIAKPASNTQQKNVVTETFPQLRDIIGNTMIKIT 192
>SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15)
Length = 711
Score = 30.3 bits (65), Expect = 0.87
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 159 IDCTHPAEDSILDVGNFEKYLKERV--KVEGKTNNLGNHVV 275
+ C H +E S L + + Y ++ KVE NNL NHV+
Sbjct: 376 LPCVHSSETSELFAQDLKMYYVQKAFSKVEPMLNNLSNHVI 416
>SB_43215| Best HMM Match : ResIII (HMM E-Value=7.9)
Length = 235
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 14 HVFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 142
HV CC D G KE P ++W + + RW S RCQ ED
Sbjct: 107 HVVCCGDYGQVPPWGDKEGPHDMLKEWAQGNIRWFESDYRCQCED 151
>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2484
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 185 ILSRVCAVNGKFKANLPLGTFAANFATFYSFLTSLL 78
++ CA+ G LP+ A+NF+ FY++ + L
Sbjct: 1999 VVGSACAICGVLVIALPVSVVASNFSIFYTYAKARL 2034
>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3133
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 17 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 142
V CC D G KE P ++W +R+ RW S RC ED
Sbjct: 2969 VVCCGDYGQVPPLGDKEEPHDMLKEWAQRNIRWFESDYRCLCED 3012
>SB_55881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 17 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 142
V CC D G KERP ++W + + RW S RC ED
Sbjct: 550 VVCCGDYGQVPPWGDKERPHDMLKEWAQGNIRWFESDYRCLSED 593
>SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)
Length = 1433
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 17 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 142
V CC D G KE P + W +R+ RW S RCQ ED
Sbjct: 1128 VVCCGDYGQVPPWGDKEGPHDMLKAWAQRNIRWFESDYRCQCED 1171
>SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)
Length = 934
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 194 QDAILSRVCAVNGKFKANLPLGTFAANFATFYS 96
Q I+ +CAV G LP+ +NF+ +YS
Sbjct: 7 QGQIVGSLCAVCGVLMIALPVPVIVSNFSLYYS 39
>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 185 ILSRVCAVNGKFKANLPLGTFAANFATFYSF 93
++ VCA++G LP+ A+NF+ + S+
Sbjct: 386 LVGSVCAISGVLMIALPVSVVASNFSLYNSY 416
>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
Length = 1851
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 185 ILSRVCAVNGKFKANLPLGTFAANFATFY 99
+LS CA+ G LP+ TF +NF Y
Sbjct: 1790 LLSAACAIFGAITLALPVLTFVSNFNKLY 1818
>SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 983
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 287 QDKSRYQRRHSLLKEVSQIPDQALPQEKQSSGLAP 391
Q++ + QRR L ++ Q P Q LPQ Q P
Sbjct: 802 QERQQLQRRQLLQQQQQQKPKQLLPQRVQQQQYLP 836
>SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 1053
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 5 EALHVFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 142
E V CC D G R KE P ++W + + RW S RC ED
Sbjct: 558 ECCKVVCCGDYGQVPPWRDKEGPHDMLKEWAQGNIRWFESDYRCLCED 605
>SB_29335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 5 EALHVFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 142
E V CC D G R KE P ++W + + RW S RC ED
Sbjct: 496 ECCKVVCCGDYGQVPPWRDKEGPHDMLKEWAQGNIRWFESDYRCLCED 543
>SB_1849| Best HMM Match : His_leader (HMM E-Value=6.2)
Length = 135
Score = 27.9 bits (59), Expect = 4.6
Identities = 8/42 (19%), Positives = 27/42 (64%)
Frame = -1
Query: 476 LILVVFIVAISIDVEVAKLI*VMCRSHHSEPVPKIVFLEVTL 351
+++++F++ + + +++ ++ V+C S H + ++F+ V L
Sbjct: 89 VVIIIFVIIVIVIIQIVSILIVICSSRH-DTFEFVIFVIVIL 129
>SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)
Length = 256
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 185 ILSRVCAVNGKFKANLPLGTFAANFATFYS 96
I+ +CA++G LP+ +NF FY+
Sbjct: 167 IVGALCAISGVLTIALPVPVIVSNFENFYN 196
>SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39)
Length = 605
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 185 ILSRVCAVNGKFKANLPLGTFAANFATFY 99
I+ +CA+ G LP+ NF+T+Y
Sbjct: 392 IIGSLCAICGVLIIGLPVSVIGNNFSTYY 420
>SB_8959| Best HMM Match : PAN (HMM E-Value=0.013)
Length = 450
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 158 GKFKANLPLGTFAANFATFYSFLTSLLV*LAFLCDGLLCNCHLGN 24
G F+ ++ G NF+ FY FL + L G+L N H+ N
Sbjct: 294 GTFRVDVVDGPATNNFSVFYQFLMVATM-LNVALPGILLNIHILN 337
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,257,169
Number of Sequences: 59808
Number of extensions: 285607
Number of successful extensions: 965
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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