Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C22
         (373 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 79  NEGNRAHPGRTMRKPD 126
           NE N   PGR   KP+
Sbjct: 391 NESNITWPGRLQTKPE 406


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 194 DSDLQLERINVYYNEASGGKYV 259
           D+ L+   I  Y N+  GG++V
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFV 93


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 99  SRPDNAETRLELSSGRSSPMSTAS 170
           SRP + E R    S + SP++ AS
Sbjct: 347 SRPSDKEEREAQKSQKPSPVTGAS 370


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 135 SSGRSSPMSTASTPP 179
           ++G +SPMST+S  P
Sbjct: 129 NNGYASPMSTSSYDP 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,987
Number of Sequences: 438
Number of extensions: 1639
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)