Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C22
(373 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 194 1e-50
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 191 1e-49
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 191 1e-49
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 191 1e-49
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 188 8e-49
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 188 1e-48
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 188 1e-48
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 186 4e-48
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 186 5e-48
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 92 9e-20
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 92 9e-20
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 92 1e-19
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 90 5e-19
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 90 5e-19
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 87 3e-18
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 87 3e-18
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 84 3e-17
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 83 4e-17
At4g37190.1 68417.m05265 expressed protein 34 0.035
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 29 1.3
At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid t... 28 1.7
At4g15090.1 68417.m02318 far-red impaired response protein (FAR1... 28 2.3
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 3.0
At1g79920.2 68414.m09339 heat shock protein 70, putative / HSP70... 27 3.0
At1g79920.1 68414.m09338 heat shock protein 70, putative / HSP70... 27 3.0
At4g20990.1 68417.m03038 carbonic anhydrase family protein simil... 27 4.0
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 4.0
At1g27595.1 68414.m03365 expressed protein similar to Symplekin ... 27 5.3
At3g63240.1 68416.m07105 endonuclease/exonuclease/phosphatase fa... 26 7.0
At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger) fa... 26 7.0
At1g08860.1 68414.m00987 copine, putative Similar to BONZAI1 [Ar... 26 7.0
At4g16410.1 68417.m02483 expressed protein contains Pfam PF05421... 26 9.2
At3g07470.1 68416.m00891 expressed protein contains Pfam profile... 26 9.2
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 26 9.2
At1g17210.1 68414.m02097 expressed protein distantly related to ... 26 9.2
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 194 bits (474), Expect = 1e-50
Identities = 84/99 (84%), Positives = 95/99 (95%), Gaps = 1/99 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 256
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 257 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 373
VPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAG
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG 99
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 191 bits (466), Expect = 1e-49
Identities = 83/98 (84%), Positives = 93/98 (94%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 259
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 373
PRAIL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAG
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAG 98
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 191 bits (466), Expect = 1e-49
Identities = 85/99 (85%), Positives = 93/99 (93%), Gaps = 1/99 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 256
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD+ DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 257 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 373
VPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAG
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAG 99
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 191 bits (465), Expect = 1e-49
Identities = 85/98 (86%), Positives = 92/98 (93%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 259
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 373
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAG
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAG 98
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 188 bits (459), Expect = 8e-49
Identities = 84/98 (85%), Positives = 91/98 (92%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 259
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 373
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAG
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAG 98
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 188 bits (458), Expect = 1e-48
Identities = 82/98 (83%), Positives = 91/98 (92%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 259
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 373
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAG
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAG 98
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 188 bits (458), Expect = 1e-48
Identities = 82/98 (83%), Positives = 91/98 (92%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 259
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 373
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAG
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAG 98
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 186 bits (453), Expect = 4e-48
Identities = 81/98 (82%), Positives = 92/98 (93%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 259
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 373
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAG
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAG 98
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 186 bits (452), Expect = 5e-48
Identities = 80/98 (81%), Positives = 91/98 (92%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 259
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 373
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAG
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAG 98
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 92.3 bits (219), Expect = 9e-20
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 253
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 254 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGA 370
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA 99
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 92.3 bits (219), Expect = 9e-20
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 253
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 254 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGA 370
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA 99
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 253
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 254 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGA 370
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA 99
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 89.8 bits (213), Expect = 5e-19
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 253
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 254 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGA 370
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA 99
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 89.8 bits (213), Expect = 5e-19
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 253
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 254 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGA 370
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA 99
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 87.4 bits (207), Expect = 3e-18
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 253
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 254 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGA 370
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA 99
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 87.4 bits (207), Expect = 3e-18
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 253
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 254 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGA 370
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDA 99
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 83.8 bits (198), Expect = 3e-17
Identities = 35/97 (36%), Positives = 58/97 (59%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 262
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 263 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 373
RA+L+DLEP ++ +++G + ++ +N G G
Sbjct: 63 RALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGG 99
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 83.4 bits (197), Expect = 4e-17
Identities = 35/97 (36%), Positives = 58/97 (59%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 262
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 263 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAG 373
RA+L+DLEP ++ +++G + ++ +N G G
Sbjct: 63 RALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGG 99
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 33.9 bits (74), Expect = 0.035
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGI--DP-TGAYHGDSDLQLERINVYYNEASG- 247
MREIV IQ G+ N +G+ FW + G+ DP + + +L ++ + G
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60
Query: 248 GKYVPRAILVDLEP--GTMDS 304
Y PR + V+L+ GTM S
Sbjct: 61 ATYTPRLVSVNLKGALGTMSS 81
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 28.7 bits (61), Expect = 1.3
Identities = 24/75 (32%), Positives = 32/75 (42%)
Frame = -3
Query: 365 RTVRKRSCRAGRSVRRVPSGQSPWCXXXXXXXXXXXRTCLRRPHCNKH*CAPAASLSRRG 186
R V +SCR G + ++VP Q C R RR C+ C P + + G
Sbjct: 376 RIVVTKSCRCGVTKKQVPCHQELACERKCQRVRDCARHACRRRCCDGE-CPPCSEIC--G 432
Query: 185 KHRWGRCRAHRR*SP 141
K RCR H+ SP
Sbjct: 433 KKL--RCRNHKCQSP 445
>At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein GI:2627141 from (Picea abies); contains
Pfam profile PF00234 Protease inhibitor/seed storage/LTP
family
Length = 180
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 15 CVVRAEQKILVLSNLFSSDISK*GKSCTSRPDNAETRLELSSGRSS-PMSTASTPPVLTT 191
C V +L NL + K+C ++ D + + + SS P +T TPP +T
Sbjct: 78 CAVFNNVDMLKSLNLTKENALDLPKACGAKADVSLCKTSAGTNSSSTPPATPKTPPASST 137
Query: 192 ATQTCSWS 215
+T T S S
Sbjct: 138 STGTGSGS 145
>At4g15090.1 68417.m02318 far-red impaired response protein (FAR1) /
far-red impaired responsive protein (FAR1) identical to
far-red impaired response protein FAR1 [Arabidopsis
thaliana] gi|5764395|gb|AAD51282; contains Pfam:PF03101
domain: FAR1 family
Length = 768
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 371 RRRTVRKRSCRAGRSVRRVPSGQ 303
RR TV+K C+A V+R P G+
Sbjct: 57 RRSTVKKTDCKASMHVKRRPDGK 79
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 86 EIVHIQAGQCGNQIGAKFWEIISD 157
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At1g79920.2 68414.m09339 heat shock protein 70, putative / HSP70,
putative contains Pfam profile: PF00012 Heat shock hsp70
proteins; similar to heat-shock proteins GB:CAA94389,
GB:AAD55461 [Arabidopsis thaliana]
Length = 736
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 203 SLSRRGKHRWGRCRAHR 153
SL+RRGKH W CR R
Sbjct: 645 SLTRRGKHSWRICRKLR 661
>At1g79920.1 68414.m09338 heat shock protein 70, putative / HSP70,
putative contains Pfam profile: PF00012 Heat shock hsp70
proteins; similar to heat-shock proteins GB:CAA94389,
GB:AAD55461 [Arabidopsis thaliana]
Length = 736
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 203 SLSRRGKHRWGRCRAHR 153
SL+RRGKH W CR R
Sbjct: 645 SLTRRGKHSWRICRKLR 661
>At4g20990.1 68417.m03038 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 267
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 128 GAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILV 277
G + W I+ + TG Y DL ER+++ +++A +Y P ++
Sbjct: 45 GPEGWGKINPHWKVCNTGRYQSPIDLTNERVSLIHDQAWTRQYKPAPAVI 94
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 101 QAGQCGNQIGAKFWEIISDEHGIDPTGAYHG 193
QA G IG ++W IIS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At1g27595.1 68414.m03365 expressed protein similar to Symplekin
(SP:Q92797) {Homo sapiens}
Length = 1091
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 180 PVGSMPCSSEMISQNLAPIW 121
PVG C SE ++Q L +W
Sbjct: 655 PVGKEVCDSERVTQGLGAVW 674
>At3g63240.1 68416.m07105 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 547
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 87 KSCTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSAS 221
++C+ R ETR + +SGR+ PP+ T +W+ +
Sbjct: 54 EACSVRKSKTETRSKRNSGRARRNKLDVDPPLDHLRVFTATWNVA 98
>At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 235
Score = 26.2 bits (55), Expect = 7.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 93 CTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSASMF 227
C+S N+ + SS +P +T TPP+ T T S S F
Sbjct: 87 CSSSRRNSSSSRTSSSSDDTPHATVDTPPI--TETTVTSESGGKF 129
>At1g08860.1 68414.m00987 copine, putative Similar to BONZAI1
[Arabidopsis thaliana] GI:15487382; contains Pfam
profile PF00168: C2 domain
Length = 589
Score = 26.2 bits (55), Expect = 7.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 162 CSSEMISQNLAPIWFPHC 109
C +E++ NL P+W P C
Sbjct: 240 CRTEVVDNNLNPMWRPVC 257
>At4g16410.1 68417.m02483 expressed protein contains Pfam PF05421:
Protein of unknown function (DUF751)
Length = 185
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 90 SCTSRPDNAETRLELSSGRSSPMSTASTPPV 182
SC R +A RL S R+S + A PP+
Sbjct: 42 SCLVRCGSARRRLTTKSSRNSKLERAQPPPL 72
>At3g07470.1 68416.m00891 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 169
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 164 GIDPTGAYHGDSDLQLERINVYYNEASGGKY 256
GI P G D++ R +VY N+A KY
Sbjct: 43 GIFPKGVREFTFDVETGRFSVYLNQACEAKY 73
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = -2
Query: 372 PAPDCPKTKLSGRKICPKGPERTESMVPG-SRSTRMARGT 256
PAP P L ICP G + M SRS + GT
Sbjct: 129 PAPTSPANVLPTGNICPSGKIQITGMTQSRSRSDVLGSGT 168
>At1g17210.1 68414.m02097 expressed protein distantly related to
dentin phosphoryn [Homo sapiens] (GI:4322670)
Length = 958
Score = 25.8 bits (54), Expect = 9.2
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Frame = -2
Query: 363 DCPK-TKLSGRKICPKGPERTESMV--PG------SRSTRMARGTY--LPPE 241
DC + + S R CP GP R +S + PG S S+R A G Y L PE
Sbjct: 280 DCEEHSAQSARNGCPSGPARNQSRLQDPGPSRKQFSASSRKASGNYEVLGPE 331
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,905,807
Number of Sequences: 28952
Number of extensions: 151770
Number of successful extensions: 563
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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