Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C21
         (203 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    28   0.19 
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    24   2.4  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    24   3.2  
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy...    22   9.7  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    22   9.7  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 43  VKNIKIRTIMSTNENNSEVAVDKVNDE 123
           +K+  ++T  STNE  S +AVD +N++
Sbjct: 432 IKHTVVKTFRSTNEQLSLIAVDALNND 458


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 61  RTIMSTNENNSEVAVDKVNDESKGDAKSDL 150
           +T+ STN   SE+ + K +  S  D  SD+
Sbjct: 142 KTLQSTNLKGSEIQISKKSPPSLFDRISDM 171


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 22  WKLLILVVKNIKIRTIMSTNENNSEVAVDKVNDESKGDAKSD 147
           W +LIL +   +  T   T++  SE   ++V+DE     K+D
Sbjct: 344 WLILILRI-GYRAFTTNDTHDERSEDEDEEVSDEKSSAKKND 384


>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = +1

Query: 55  KIRTIMSTNENNSEVAVDK----VNDESKGDAK 141
           K +++ + N   SE+  +K    + +++KGDAK
Sbjct: 50  KAKSVTTNNSLKSEIKKEKSVPSIKEKNKGDAK 82


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 91  SEVAVDKVNDESKGD 135
           SEVA DK+ D S G+
Sbjct: 619 SEVASDKITDSSPGN 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.126    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 489,896
Number of Sequences: 5004
Number of extensions: 5219
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)