Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C21
         (203 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0767 + 21004373-21004545,21004656-21004711,21004800-210048...    28   1.2  
03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654...    26   3.6  

>08_02_0767 +
           21004373-21004545,21004656-21004711,21004800-21004882,
           21004942-21005112,21005806-21005997
          Length = 224

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 136 RHLCSHR*PCLRPLHC 89
           R L   R PCLRP+HC
Sbjct: 58  RRLWQQRPPCLRPIHC 73


>03_02_0222 +
           6540095-6540099,6541215-6541339,6541440-6541766,
           6541815-6543215,6543268-6543357,6543800-6544515,
           6545549-6545707,6545877-6546186,6546794-6546861,
           6547354-6547896
          Length = 1247

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 10  SGQPWKLLILVVKNIKIRTIMSTNENNSEVAVDKVND 120
           +G  W L+ LV +  +  T++  + +N+EV   +V+D
Sbjct: 694 TGALWNLIQLVGEQSRRNTVLLMDRDNAEVFYSRVSD 730


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.307    0.126    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,488
Number of Sequences: 37544
Number of extensions: 31688
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)