Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C21
         (203 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033513-2|CAA22079.2|  439|Caenorhabditis elegans Hypothetical ...    27   2.4  
AL021446-4|CAA16267.2|  439|Caenorhabditis elegans Hypothetical ...    27   2.4  
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    25   7.4  
AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm rece...    25   9.7  

>AL033513-2|CAA22079.2|  439|Caenorhabditis elegans Hypothetical
           protein Y70D2A.1 protein.
          Length = 439

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 1   ARGSGQPWKLLILVVKNIKIRTIMSTNENNSEVAVDKVNDESK 129
           AR  GQP   L    ++ K  TI   N+N  +  +D  +++SK
Sbjct: 350 ARVKGQPTTPLSKYTRSTKNSTIRDANKNGEKRGIDGNDNDSK 392


>AL021446-4|CAA16267.2|  439|Caenorhabditis elegans Hypothetical
           protein Y70D2A.1 protein.
          Length = 439

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 1   ARGSGQPWKLLILVVKNIKIRTIMSTNENNSEVAVDKVNDESK 129
           AR  GQP   L    ++ K  TI   N+N  +  +D  +++SK
Sbjct: 350 ARVKGQPTTPLSKYTRSTKNSTIRDANKNGEKRGIDGNDNDSK 392


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
           protein R11G1.1 protein.
          Length = 1656

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 7   GSGQPWKLLILVVKNIKIRTIMSTNENNSE 96
           G+GQ  + L LVV  +K+ T+ +T++ + E
Sbjct: 655 GNGQCEETLSLVVVKVKVNTVCNTDKASLE 684


>AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 205 protein.
          Length = 345

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 147 VTFRVTFALIVDLVYGHFTVIFIGTHDCSD 58
           + F     +I  LV+G   V+F G  D +D
Sbjct: 133 ILFWFAIPIIYGLVWGSIAVVFCGPRDITD 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.307    0.126    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,620
Number of Sequences: 27780
Number of extensions: 29572
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)