Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C21
         (203 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70900.1 68414.m08181 expressed protein                             29   0.56 
At5g17160.1 68418.m02010 expressed protein                             28   0.98 
At3g06340.1 68416.m00731 DNAJ heat shock N-terminal domain-conta...    28   0.98 
At4g23600.2 68417.m03400 coronatine-responsive tyrosine aminotra...    27   1.3  
At4g23600.1 68417.m03399 coronatine-responsive tyrosine aminotra...    27   1.3  
At3g52820.1 68416.m05820 purple acid phosphatase (PAP22) identic...    25   6.9  

>At1g70900.1 68414.m08181 expressed protein
          Length = 244

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 142 FSRHLCSHR*PCLRPLHCYFH 80
           F   +   R PCLRP+HC  H
Sbjct: 50  FIERVWQQRPPCLRPIHCSIH 70


>At5g17160.1 68418.m02010 expressed protein
          Length = 569

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 43  VKNIKIRTIMSTNENNSEVAVDKVNDESKGDAKSD 147
           +KN  ++ +    ENN E+ +  VN+   G++K +
Sbjct: 484 LKNSPLKLVNENKENNMEMMMMNVNNNENGESKGE 518


>At3g06340.1 68416.m00731 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 673

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 46  KNIKIRTIMSTNENNSEVAVDKVNDESKGDAKS 144
           ++++ +  +S NEN S+  VD VND  +G  K+
Sbjct: 336 RSVRSKQKVSYNENLSDDDVDLVNDNGEGSGKN 368


>At4g23600.2 68417.m03400 coronatine-responsive tyrosine
           aminotransferase / tyrosine transaminase similar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II; identical to cDNA
           coronatine-regulated tyrosine aminotransferase
           (F9D16.70)  GI:15076852
          Length = 318

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 13  GQPWKLLILVVKNIKIRTIMSTNENNSEVAVDKV 114
           G PW L+  + KN+++R      E N E+  D V
Sbjct: 29  GFPWDLVRSIYKNLEVRHYNFLPEKNFEIDFDSV 62


>At4g23600.1 68417.m03399 coronatine-responsive tyrosine
           aminotransferase / tyrosine transaminase similar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II; identical to cDNA
           coronatine-regulated tyrosine aminotransferase
           (F9D16.70)  GI:15076852
          Length = 422

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 13  GQPWKLLILVVKNIKIRTIMSTNENNSEVAVDKV 114
           G PW L+  + KN+++R      E N E+  D V
Sbjct: 133 GFPWDLVRSIYKNLEVRHYNFLPEKNFEIDFDSV 166


>At3g52820.1 68416.m05820 purple acid phosphatase (PAP22) identical
           to purple acid phosphatase (PAP22)GI:20257494 from
           [Arabidopsis thaliana]
          Length = 434

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 144 TFRVTFALIVDLVYGHFTVIFIGTHDCSDFDIF 46
           TF V FA++ DL    +T   +   +  D+D+F
Sbjct: 138 TFPVEFAIVGDLGQTEWTAATLSHINSQDYDVF 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.307    0.126    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,212
Number of Sequences: 28952
Number of extensions: 27682
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 12,070,560
effective HSP length: 47
effective length of database: 10,709,816
effective search space used: 214196320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)