Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C20
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   0.63 
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    26   2.6  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   4.5  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   5.9  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 252  RIFGKSMDFLSTLIFKSRKIYLRLYICR*YMYCCVG 145
            ++F +S +   +L FK    YL+  IC    +CC G
Sbjct: 2393 KLFTRSSNITESLSFKELCNYLKKKICYILAWCCTG 2428


>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 180 TVLNKSYVI*I*ESIKSPYFFQISVHTSLY 269
           T L K +++ I  S   PYFF    H SL+
Sbjct: 4   TGLPKPWIVKISRSRNRPYFFNTETHESLW 33


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 105 HVPRYYFKYISRNDQHSNTYITYKYTVLNKSY 200
           H  ++Y KY    ++  + + +YK T ++KSY
Sbjct: 184 HRRKHYEKYSQCLNKQLDHFFSYKVTTVHKSY 215


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 216 ESIKSPYFFQISVHTSLYSIL 278
           +S+ SP+FF+IS + S Y  L
Sbjct: 165 DSLISPFFFRISPNESAYDYL 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,175
Number of Sequences: 5004
Number of extensions: 35181
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)