Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C20
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039...    29   1.4  

>01_06_1579 +
           38402868-38402894,38403394-38403582,38403817-38403918,
           38404005-38405963,38406050-38406105,38406332-38406368
          Length = 789

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 239 FPNIRPYFPLFYSI-FDNIYLKIQLYVFEMIVIIVSSMRADT 361
           FP I P   L   I  D+I  K+Q+YVFE+  I+ S M+ ++
Sbjct: 61  FPQITPDGELSKVIQADSIIAKMQIYVFELCQIVNSLMQIES 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,312,643
Number of Sequences: 37544
Number of extensions: 165366
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)