Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C20
(406 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93383-2|CAB07624.1| 253|Caenorhabditis elegans Hypothetical pr... 28 2.9
AF038608-14|AAT92087.1| 314|Caenorhabditis elegans Serpentine r... 28 2.9
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 27 3.9
U88181-5|AAB42304.1| 140|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z81096-1|CAB03161.3| 478|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z72512-5|CAA96667.2| 351|Caenorhabditis elegans Hypothetical pr... 27 5.1
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe... 27 5.1
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe... 27 5.1
U53339-6|AAA96202.1| 348|Caenorhabditis elegans Serpentine rece... 27 5.1
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty... 27 5.1
>Z93383-2|CAB07624.1| 253|Caenorhabditis elegans Hypothetical
protein F54B8.2 protein.
Length = 253
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 403 CMLIMSSMPSYRDISIGSHTRNN 335
C L ++S+P YRD +IG +N+
Sbjct: 27 CTLYLNSIPKYRDYTIGQIVQND 49
>AF038608-14|AAT92087.1| 314|Caenorhabditis elegans Serpentine
receptor, class z protein83 protein.
Length = 314
Score = 27.9 bits (59), Expect = 2.9
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +2
Query: 203 DLNMRVDKKSILFPNIRPYF---PLFYSIF-DNIYLKIQLYVFEMIVII 337
++N DKK +LFP ++ ++ L Y +F +I L L+V IVII
Sbjct: 45 EINRDRDKKMLLFPTVQHFYEMVQLAYFLFVFSIILHTLLHVIHEIVII 93
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 403 CMLIMSSMPSYRDISIGSHTRNNNNNHFEYVKLD 302
C L+ S + + G +T NNNNN+ Y + D
Sbjct: 456 CHLLESKKTNQMEEGTGVYTSNNNNNNNNYDEYD 489
>U88181-5|AAB42304.1| 140|Caenorhabditis elegans Hypothetical
protein C55B6.5 protein.
Length = 140
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 349 HTRNNNNNHFEYVKLDF*VNVIKY 278
H RN+ N+ E++KL F +++KY
Sbjct: 12 HVRNSRNHLQEFLKLSFECHILKY 35
>Z81096-1|CAB03161.3| 478|Caenorhabditis elegans Hypothetical
protein K03H4.1 protein.
Length = 478
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 272 YSIFDNIYLKIQLYVFEMIVIIVSSMRAD 358
YSI D+++LK++ V E I ++++ R+D
Sbjct: 47 YSILDHVFLKLEKLVDEPIWLLLNVNRSD 75
>Z72512-5|CAA96667.2| 351|Caenorhabditis elegans Hypothetical
protein R07B5.7 protein.
Length = 351
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 248 IRPYFPLFYSIFDNIYLKIQLYVFEMIVI 334
I PY L Y+IF +YLK+ Y + M++I
Sbjct: 269 ILPY--LTYAIFIVLYLKVPAYTYYMMII 295
>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying
defective protein 19,isoform a protein.
Length = 1783
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 406 FCMLIMSSMPSYRDISIGSHTRNNNNNHFEY 314
FC+L+ S+M + D + TRN N+F+Y
Sbjct: 806 FCILVSSAMLAAEDPLQANSTRNMILNYFDY 836
>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying
defective protein 19,isoform b protein.
Length = 1877
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 406 FCMLIMSSMPSYRDISIGSHTRNNNNNHFEY 314
FC+L+ S+M + D + TRN N+F+Y
Sbjct: 806 FCILVSSAMLAAEDPLQANSTRNMILNYFDY 836
>U53339-6|AAA96202.1| 348|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 12 protein.
Length = 348
Score = 27.1 bits (57), Expect = 5.1
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = +1
Query: 64 FFLMFHGNSEFLLVTFHV-------IILNTFHVMTNTAIHILPTNIQS*INLT*FKYESR 222
F L FHGN +FLLV++ + II TF + +N IN T FKY
Sbjct: 48 FKLPFHGNLKFLLVSYFIGTFLFASIICFTFGYHFFVPFFV-TSNCDLIINATLFKYGHM 106
Query: 223 *KVHTFSKYPSILP 264
+ F P ILP
Sbjct: 107 IAL-IFMTIPMILP 119
>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
calcium channelalpha 1 subunit protein.
Length = 1783
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 406 FCMLIMSSMPSYRDISIGSHTRNNNNNHFEY 314
FC+L+ S+M + D + TRN N+F+Y
Sbjct: 806 FCILVSSAMLAAEDPLQANSTRNMILNYFDY 836
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,008,454
Number of Sequences: 27780
Number of extensions: 182172
Number of successful extensions: 473
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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