Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C20
         (406 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar...    27   4.8  
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ...    27   4.8  

>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
            ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2146

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 93   VFISHVPRYYFKYISRNDQHSNTYITYKY 179
            +F  H P+YY   +S +  H+ TY T  +
Sbjct: 1277 IFEPHPPQYYVHAVSDSWLHAETYFTISF 1305


>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
           (ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
           type
          Length = 178

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 403 CMLIMSSMPSYRDISIGSHTRNNNNNHFE 317
           C++I++     + I +  HT ++ +N FE
Sbjct: 20  CLMILAQTSMVKQIGLNQHTESHTSNQFE 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,220,031
Number of Sequences: 28952
Number of extensions: 157707
Number of successful extensions: 375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)