Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C19
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535...    31   0.50 
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281...    28   4.6  
02_05_1179 + 34761054-34761198,34761293-34761447,34761541-347617...    28   4.6  
02_05_1161 - 34583072-34583249,34583363-34583715,34583820-345840...    28   4.6  
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757...    28   4.6  
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788...    27   8.1  

>04_04_1122 +
           31052497-31052629,31053133-31053191,31053285-31053579,
           31054099-31054279,31054739-31054956,31055522-31055739,
           31055842-31055958,31056106-31056128,31056223-31056438,
           31056536-31056677,31056822-31057067,31057659-31057856,
           31058331-31058379,31060835-31060911,31061266-31061551,
           31061661-31061841,31062149-31062344,31062630-31062738,
           31062861-31062961,31063155-31063267,31063347-31063442,
           31063531-31063746,31063857-31063995,31064087-31064332,
           31064605-31064940
          Length = 1396

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 197 LVLLNGSPHPGSC*ELHW*QRKQVPISNT 111
           LVL  GS  PG C EL W   K VP+  T
Sbjct: 661 LVLRRGSAVPGPCKELFWKMCKHVPLRTT 689


>03_01_0360 +
           2815067-2816033,2816120-2816198,2816275-2816342,
           2817382-2817464,2821566-2823083
          Length = 904

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 94  LAFLLAVFEIGTCLRCYQCNSQQDPGCGDPFKSTKYL 204
           + F    FE    LR +Q N   D  CG  F S KYL
Sbjct: 798 IEFCDMTFETKAELRAHQRNICTDESCGKRFSSHKYL 834


>02_05_1179 +
           34761054-34761198,34761293-34761447,34761541-34761723,
           34761825-34762177,34762288-34762451,34762837-34762930,
           34763898-34763958
          Length = 384

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = -1

Query: 126 TNFKYCQKEGECYSCSYFCHVLFLTDKVSANGRALTILVPS 4
           +++++C++    Y C+     +  T++ +  G  L ++VPS
Sbjct: 152 SDYEFCRQTDNLYCCAKMMAEMTATEEAAKRGLELAVVVPS 192


>02_05_1161 -
           34583072-34583249,34583363-34583715,34583820-34584002,
           34584096-34584250,34584346-34584493
          Length = 338

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = -1

Query: 126 TNFKYCQKEGECYSCSYFCHVLFLTDKVSANGRALTILVPS 4
           +++++C++    Y C+     +  T++ +  G  L ++VPS
Sbjct: 153 SDYEFCKQTDNLYCCAKMMAEMTATEEAAKRGLELAVVVPS 193


>02_05_1123 +
           34275272-34275331,34275451-34275523,34275631-34275728,
           34276012-34276153,34276261-34276361,34276633-34276716,
           34276949-34277014,34277102-34277167,34277324-34277404,
           34277489-34277566,34277687-34277848,34277936-34278011,
           34278111-34278223,34278323-34278751
          Length = 542

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 218 PKTLSITTSSTFVKS*PLKSSAPSWEPLDLVTRSSPIPDQS 340
           P  +S + S    +  P+K  +P  EP DL+  + P PD S
Sbjct: 307 PPPVSTSESEPEPEPEPVKEVSPVHEPTDLLGMNEPTPDVS 347


>05_05_0357 +
           24377989-24378039,24378601-24378632,24378724-24378818,
           24379165-24379237,24379804-24379867,24380465-24380732,
           24381132-24381202,24382028-24382084,24382302-24382403,
           24382544-24382588,24383616-24383693,24384350-24384400,
           24384475-24384556,24384883-24384956,24386093-24386144,
           24386230-24386288,24386380-24386456,24386692-24386778,
           24387011-24387101
          Length = 502

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 343 RTCLDVNPADLNHTCRLMEKNSKVKYCSVCD 435
           +T L+V     NH CR  + NS   +C+  D
Sbjct: 201 KTSLEVTVTFYNHDCRFAKFNSPSSFCTSSD 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,906
Number of Sequences: 37544
Number of extensions: 287472
Number of successful extensions: 687
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)