Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C19
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)         30   0.89 
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_30226| Best HMM Match : Lactamase_B (HMM E-Value=8.4e-19)           28   3.6  
SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)                27   6.3  
SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)              27   8.3  
SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)                   27   8.3  
SB_24653| Best HMM Match : Ribosomal_L16 (HMM E-Value=4)               27   8.3  
SB_6099| Best HMM Match : UPAR_LY6 (HMM E-Value=0.17)                  27   8.3  
SB_52198| Best HMM Match : Folate_rec (HMM E-Value=0)                  27   8.3  
SB_38816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_29856| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_24664| Best HMM Match : UPAR_LY6 (HMM E-Value=0.17)                 27   8.3  

>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
          Length = 1285

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 409 WNSFPLSGMCGSNRLGSHRGRCARLIR 329
           WN FP+SG CG +  G  +GR  RL R
Sbjct: 117 WNGFPISGNCG-DLPGREKGRHKRLQR 142


>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 206 WTAAPKTLSITTSSTFVKS*PLKSSAPSWEPLD 304
           WT+  +TLS+ TSS F +  P     PS  P +
Sbjct: 563 WTSTERTLSLRTSSEFDRLSPKGYETPSMRPTE 595


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
 Frame = +1

Query: 124  GTCLRCYQCNSQQDPG------CGDPFKSTKYLVDCGTQDAINYNQLYLREVLTPEIFST 285
            G+ L CY C++   PG      C  P K T     CG     N  Q      LT  + + 
Sbjct: 957  GSALACYACSNATQPGEHPSIPCDKPVKQT-----CGNDPLTNLPQ---DRCLTIVMETK 1008

Query: 286  VLGAPRSCHKIVTDTGSVVRTCLDVNPADLNHTCRLMEKNSKVKYCSVCDKDSCNGAGTT 465
            V G+    H+ + +  S    C D+  A+ N +  L+ K S     S C  + CN  G  
Sbjct: 1009 VPGSGHVMHQEMRNC-SAEHYCNDMICANANMS-GLLTKCS----VSCCHGNGCNNEG-- 1060

Query: 466  SVSIPLAT 489
             ++IP +T
Sbjct: 1061 -LAIPTST 1067


>SB_30226| Best HMM Match : Lactamase_B (HMM E-Value=8.4e-19)
          Length = 318

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +1

Query: 166 PGCGDPFKSTKYLVDCGTQDAINYNQLYLREVLTPEIFSTVLGAPRSCHKIVTDTGSVVR 345
           PG    F+ T  L+  G    + Y   YL   L P  FS V    +SCHK++  +  V R
Sbjct: 196 PGSIALFEQTSGLLFTGDM-LVKYKSRYLD--LLP--FSDVTSYAQSCHKLLAISQDVTR 250

Query: 346 TC 351
            C
Sbjct: 251 VC 252


>SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)
          Length = 1578

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 392 KRHVWFKSAGFTSRQVRTTDPVSVTIL*QDLGAPKTVLKISGVKTS 255
           K+ VW   AG+T+  V T DP  V      LGA   +L  +   +S
Sbjct: 411 KKGVWGDIAGWTNTPVATIDPFGVEANQCPLGAEGNLLSSNNTTSS 456


>SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)
          Length = 1642

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 325 DTGSVVRTCLDVNPADLNHTCRLMEKNSKVKYCSVCDKDSC 447
           + GS+++TC+ V P    H   +  +  K   C V  ++ C
Sbjct: 244 ECGSILQTCVLVQPRTKEHVINIDSQGFKPDDCCVRSEELC 284


>SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)
          Length = 566

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 325 DTGSVVRTCLDVNPADLNHTCR 390
           D G+V  TC   +  D+ HTCR
Sbjct: 23  DHGNVTHTCRKEDHGDVTHTCR 44


>SB_24653| Best HMM Match : Ribosomal_L16 (HMM E-Value=4)
          Length = 153

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +1

Query: 73  KITTAITLAFLLAVFEIGTCLRCYQCNSQQDPG-CGDPFKSTKYLVDCGTQDAINYN 240
           K  T +T A   +   IGTC R  Q   +  P    + F  T    + G    INYN
Sbjct: 48  KTNTTLTRAQNSSNLAIGTCTRTSQYTRESKPNKIFNDFSQTSKPKEAGIAMGINYN 104


>SB_6099| Best HMM Match : UPAR_LY6 (HMM E-Value=0.17)
          Length = 230

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +1

Query: 307 CHKIVTDTGSVVRTCLDVNPA-DLNHTCRLMEKNSKVKYCSVCDKDSCNGAGTTSV 471
           C K V +   VV+TC       D  + C      +   +C  CD D CNG  TT +
Sbjct: 61  CSKTVKNN-KVVKTCASQRICEDQTNACAAQGCEN---FC--CDSDKCNGVTTTGI 110


>SB_52198| Best HMM Match : Folate_rec (HMM E-Value=0)
          Length = 583

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 147 LVTA*TGTNFKYCQKEGECYSCSY 76
           L T   G +FKY QK GEC + ++
Sbjct: 423 LCTKQWGDSFKYSQKSGECLNLNF 446


>SB_38816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +1

Query: 73  KITTAITLAFLLAVFEIGTCLRCYQCNSQQDPG-CGDPFKSTKYLVDCGTQDAINYN 240
           K  T +T A   +   IGTC R  Q   +  P    + F  T    + G    INYN
Sbjct: 48  KTNTTLTRAQNSSYLAIGTCTRTSQYTRESKPNKIFNDFSQTSKPKEAGIAMDINYN 104


>SB_29856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 286 VLGAPRSC-HKIVTDTGSVVRTCLDVNPADL-NHTCRLMEKNSKVKYCSVC 432
           +LG    C H+  TD  S +R  +  N + + NH   LME    + +C+ C
Sbjct: 92  LLGVTGDCSHR--TDPFSCIRIYIHFNTSSIINHEAVLMENEKSLVHCNKC 140


>SB_24664| Best HMM Match : UPAR_LY6 (HMM E-Value=0.17)
          Length = 127

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +1

Query: 307 CHKIVTDTGSVVRTCLDVNPA-DLNHTCRLMEKNSKVKYCSVCDKDSCNGAGTTSV 471
           C K V +   VV+TC       D  + C      +   +C  CD D CNG  TT +
Sbjct: 61  CSKTVKNN-KVVKTCASQRICEDQTNACAAQGCEN---FC--CDSDKCNGVTTTGI 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,848,812
Number of Sequences: 59808
Number of extensions: 351057
Number of successful extensions: 1577
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)