Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C19
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48400.1 68416.m05283 DC1 domain-containing protein similar t...    29   2.2  
At1g01800.1 68414.m00099 short-chain dehydrogenase/reductase (SD...    29   2.2  
At4g07960.1 68417.m01276 glycosyl transferase family 2 protein s...    27   5.1  
At2g43250.1 68415.m05375 expressed protein  and genefinder             27   5.1  
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ...    27   5.1  
At5g49970.1 68418.m06188 pyridoxamine 5'-phosphate oxidase-relat...    27   9.0  
At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase f...    27   9.0  
At2g18470.1 68415.m02151 protein kinase family protein contains ...    27   9.0  

>At3g48400.1 68416.m05283 DC1 domain-containing protein similar to
           UV-B light insensitive ULI3 [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 619

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 361 NPADLNHTCRLMEKNSKVKYCSVCDK 438
           NP   NH+  L+EK  K  +C VC K
Sbjct: 120 NPKCHNHSLVLLEKQVKKDHCGVCKK 145


>At1g01800.1 68414.m00099 short-chain dehydrogenase/reductase (SDR)
           family protein similar to carbonyl reductase GI:1049108
           from [Mus musculus]
          Length = 295

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 292 GAPRSCHKIVTDTGSVVRTCLDVNPADLNHTCRLM 396
           GAP    KI++DT  +V  C+  N   +   C  M
Sbjct: 113 GAPTDISKIMSDTYEIVEECVKTNYYGVKRMCEAM 147


>At4g07960.1 68417.m01276 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 699

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 195 GAFEWITTSWILLRI 151
           G F+W+ T W+LLR+
Sbjct: 165 GFFDWVYTRWVLLRV 179


>At2g43250.1 68415.m05375 expressed protein  and genefinder
          Length = 625

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -2

Query: 476 IETDVVPAPLQLSLSHTLQYLTLEFFSIKRHVWFKSAGFTSRQVRTTDPVSVTIL*QDLG 297
           I T  VP  L L L+HT + +T  F  +       + GF S   ++T  V  ++  + + 
Sbjct: 453 IVTFKVPGSLNLFLTHTHKAVTFAFTKVAVPSKAMAPGFASSGAKSTSLVKASLSAEKIR 512

Query: 296 APKTVLKISGVKTS 255
           A    +  S  KTS
Sbjct: 513 AVTHSIIASVEKTS 526


>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 649

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 340 VRTCLDVN-PADLNHTCRLMEKNSKVKYCSVCDK 438
           V + L +N P+  NH+ +L     + KYC +C K
Sbjct: 165 VESPLRINYPSHANHSFQLYSSKKRFKYCIMCRK 198


>At5g49970.1 68418.m06188 pyridoxamine 5'-phosphate oxidase-related
           contains weak similarity to Pyridoxamine 5'-phosphate
           oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx).
           (Swiss-Prot:P28225) [Shigella flexneri]
          Length = 530

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 369 GWVHIEAGAHD*SGIGDDLVTRSRGSQDGAEDFRG 265
           GW H+E G H+  GI  D++      +  A+ FRG
Sbjct: 242 GW-HVEEGDHEDGGIKPDMLVSLTAPKLCAKRFRG 275


>At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 367

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +1

Query: 247 YLREVLT--PEIFSTVLGAPRSCHKI--VTDTGSVVRTCLDVN 363
           ++  +LT  P +F+TVLG   +C  +  +  T + + T +D+N
Sbjct: 252 HIHHILTTPPHVFTTVLGWQNTCETVEDIAATLAALNTEIDIN 294


>At2g18470.1 68415.m02151 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 633

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 22/60 (36%), Positives = 27/60 (45%)
 Frame = +2

Query: 191 APNI*WTAAPKTLSITTSSTFVKS*PLKSSAPSWEPLDLVTRSSPIPDQSCAPASM*TQP 370
           AP    T++P   S T S+T   S P   S PS  P    + SSP PD +  PA     P
Sbjct: 8   APPTNSTSSPSPPSNTNSTT---SSPPAPSPPSPTPPQGDSSSSPPPDSTSPPAPQAPNP 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,830,288
Number of Sequences: 28952
Number of extensions: 226810
Number of successful extensions: 610
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)