Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C18
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    27   0.63 
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   2.5  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   2.5  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   3.4  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    24   5.9  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    24   5.9  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   7.8  

>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -3

Query: 307 FVSSFGIQASLRLSASLSTGWFLMVSPSIASLNNPGLVIPLLMGPKLGSGPIVSKNVDG 131
           FVS+F  +      + +STGW   V   +AS   P   +P      LG G +     DG
Sbjct: 123 FVSTFAGETDTFGYSDVSTGWDSAVKEPLASAGYPIYFVP--SWTSLGQGALEESVADG 179


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 132 PSTFFDTIGPEPNLGPIKSGITSPGL 209
           P TFF +  P+P  GPI +  T+P L
Sbjct: 265 PPTFFSSPSPQPYSGPILAS-TAPTL 289


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -3

Query: 310 FFVSSFGIQASLRLSASLSTGWFLMVSPSIASLNNPGLVIPLLMGPKLGSGPIVSKN 140
           F    FG  A     ASL+  W   + P      + G V   ++GP LG+  +V+K+
Sbjct: 182 FLAGVFGSPALSTGGASLADIWQPWLYPYFMCFWSLGAVGGPVLGPLLGAAMVVAKS 238


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 163 SGPIVSKNVD-GSGKLVAGSGVDPLTVGTTLEKLISSETCC*LNEAVIFV 17
           +G IV +  D  S KL +   V  ++ GTT +K++  E C       +FV
Sbjct: 340 NGRIVPRFEDLSSDKLGSAGIVREVSFGTTRDKILVIEKCANSRAVTVFV 389


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 165 PNLGPIKSGITSPGLLSEAMEGLTIKN 245
           PN G I S +  P LLSE   G   KN
Sbjct: 171 PNSGYITSPLRHPILLSETEPGTPTKN 197


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 210 LSEAMEGLTIKNQPVDKEADR 272
           L E  EGLT+K   + KE DR
Sbjct: 525 LREENEGLTLKIDSITKEKDR 545


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 201 PGL-LSEAMEGLTIKNQPVDKEADRRRDAWIPNDETKKI 314
           PG+ L      + I   PVD+  DR R  +  ND+   +
Sbjct: 527 PGVGLGNKGSKIQINMTPVDRVKDRARSLYFQNDKNNNL 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,681
Number of Sequences: 5004
Number of extensions: 28890
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)