Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C18
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0332 - 22420689-22420988 29 0.76
02_02_0629 + 12386214-12386533,12386666-12386749,12386834-123869... 28 1.8
07_01_0586 - 4354613-4354996,4355537-4355662,4355752-4355827,435... 27 3.1
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519... 27 3.1
09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426 27 4.0
04_04_1287 - 32390422-32391588,32392472-32392645 27 5.3
04_03_0856 + 20336390-20336906,20337276-20337397 27 5.3
10_08_0960 - 21853010-21853282,21854078-21854449,21854555-218548... 26 7.1
10_08_0915 + 21539651-21540226,21540276-21541139 26 7.1
03_01_0504 - 3792170-3792565 26 7.1
02_04_0219 + 21007875-21008253,21009774-21009811,21009948-210099... 26 7.1
11_06_0414 - 23247896-23248654,23249400-23249879,23251924-232520... 26 9.3
07_03_1181 + 24606407-24606480,24607060-24608752 26 9.3
06_03_0444 + 20864183-20864436,20864831-20865818 26 9.3
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362... 26 9.3
>11_06_0332 - 22420689-22420988
Length = 99
Score = 29.5 bits (63), Expect = 0.76
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = -3
Query: 292 GIQASLRLSASLSTGWFLMVSPSIASLNNPGLVIPLLMGPKLGSGPIVSKNVDGSGKLVA 113
G++ + RL+ +G + I +L+ + P +LG+ S DGSG+L
Sbjct: 4 GMEVAARLATEAGSGGEAGIGGRIQALDFATDLAPTASPGRLGAVAAASGGRDGSGELGD 63
Query: 112 GSGVDPLTV 86
G GV L V
Sbjct: 64 GVGVAALAV 72
>02_02_0629 +
12386214-12386533,12386666-12386749,12386834-12386972,
12387990-12388061,12388158-12388252,12388397-12388483,
12388554-12388629,12388738-12389031,12389526-12389665,
12389751-12389939,12390028-12390118,12390206-12390332,
12391146-12391253,12391343-12391433,12391676-12391685
Length = 640
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 52 FPKRLIFQVLSQPLVGLHRYQLQVYQIRQHFSIQSDRNL 168
F K L +V PL+G+H + Q+Y + H NL
Sbjct: 14 FVKPLQLKVKDYPLLGVHISECQIYDLENHMICYQVSNL 52
>07_01_0586 -
4354613-4354996,4355537-4355662,4355752-4355827,
4356444-4356651,4356813-4356906,4357430-4357504,
4358200-4358622
Length = 461
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 178 GPKLGSGPIVSKNVDGSGK-LVAGSGVDP 95
GP GSGP V++N D K +GS +P
Sbjct: 210 GPNGGSGPYVNQNTDAHAKQATSGSSREP 238
>05_01_0579 -
5196888-5196970,5197063-5197621,5197704-5197786,
5199165-5199279,5199376-5199473,5200136-5200183,
5200313-5200415,5201003-5201119,5201254-5201430,
5202563-5202593,5203492-5203604,5203824-5204036
Length = 579
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -3
Query: 157 PIVSKNVDGSGKLVAGSGVDPLTVGTTLEKLISSETCC 44
PIVS DGSG+L+AG +VG +EK +S C
Sbjct: 278 PIVSNVFDGSGELIAGVA----SVG-AVEKFLSPSWIC 310
>09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426
Length = 482
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 228 LP*LHLIIQGLLYHF*WVL 172
LP L ++I LLYHF W L
Sbjct: 430 LPGLEMVIASLLYHFDWEL 448
>04_04_1287 - 32390422-32391588,32392472-32392645
Length = 446
Score = 26.6 bits (56), Expect = 5.3
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 195 TSPGLLSEAMEGLTIKNQPVDKEADRRRDAWIPNDETKK 311
TS LSEA + T +PV AD + I NDETK+
Sbjct: 375 TSKDSLSEANQNSTQAVEPVADPADVKPRMPIYNDETKE 413
>04_03_0856 + 20336390-20336906,20337276-20337397
Length = 212
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 166 GSGPIVSKNVDGSGKLVAGSG 104
G+GP ++ V GSG L+AGSG
Sbjct: 121 GAGP-AARGVTGSGNLLAGSG 140
>10_08_0960 -
21853010-21853282,21854078-21854449,21854555-21854862,
21854946-21855102
Length = 369
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 246 QPVDKEADRRRDAWIPNDETKKILLEAQSSPK 341
+P DKEAD + P+ +TKK + Q P+
Sbjct: 323 EPDDKEADAQEQGGKPDFKTKKKQVPVQLGPR 354
>10_08_0915 + 21539651-21540226,21540276-21541139
Length = 479
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 138 TFFDTIGPEPNLG-PIKSGITSPGLLSEAMEGLTIKNQPVDKEADRRRDA 284
T D + LG P+ S S G LSE + + + ++E DRRR A
Sbjct: 293 TLLDAVAVSGALGRPVSSVTYSLGRLSELLSPIPLLPLAREREEDRRRMA 342
>03_01_0504 - 3792170-3792565
Length = 131
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 271 LSASLSTGWFLMVSPSIASLNNPG 200
+++S+ WFL SP IASL G
Sbjct: 101 VASSVRPSWFLTASPGIASLQVAG 124
>02_04_0219 +
21007875-21008253,21009774-21009811,21009948-21009976,
21010398-21010443,21010567-21010681,21010790-21010857,
21011780-21011974,21012180-21012281,21012889-21013119,
21013514-21013684
Length = 457
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 271 LSASLSTGWFLMVSPSIASLNNPG 200
+++S+ WFL SP IASL G
Sbjct: 101 VASSVRPSWFLTASPGIASLQVAG 124
>11_06_0414 -
23247896-23248654,23249400-23249879,23251924-23252091,
23252223-23252231
Length = 471
Score = 25.8 bits (54), Expect = 9.3
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = -3
Query: 235 VSPSIASLNNPGLVIPLLMGPKLGSGPIVSKNVDGSGKLVAGSGVDPLTVGTTLEKLISS 56
+S + N+ G + PK GSGP + +GKL S D +G L +L++
Sbjct: 319 ISRLLQQTNDTGTPNHITEVPK-GSGPYMDPEFKNTGKLTPQS--DVFALGIILLQLVTG 375
Query: 55 ETCC*LNEAVI 23
++ L + ++
Sbjct: 376 QSATGLRKHIV 386
>07_03_1181 + 24606407-24606480,24607060-24608752
Length = 588
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 225 EGLTIKNQPVDKEADRRRDAWIPNDETKKI 314
EGL+ +++ VD R+ AW+ +E ++
Sbjct: 154 EGLSSEDEGVDMVGRERKPAWVDEEEVTEV 183
>06_03_0444 + 20864183-20864436,20864831-20865818
Length = 413
Score = 25.8 bits (54), Expect = 9.3
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Frame = -3
Query: 337 GDDCASNRIFFVSSFGI-QASLRLSASLSTGWFLMVSPSIASLNNPGLVIPL-----LMG 176
G DC+ N ++ FG+ QA + W+L + ++ S + + + L +M
Sbjct: 99 GTDCSQNTSAYIIGFGVLQALFCQLPNFHQLWWLSIIAAVMSFSYAAIAVGLSLAQTIMD 158
Query: 175 PKLG----SGPIVSKNVDGSGKL 119
P LG +G +V +VD + K+
Sbjct: 159 P-LGRTTLTGTVVGVDVDATQKV 180
>03_05_0934 -
28935728-28935859,28936000-28936122,28936172-28936284,
28936363-28936430,28936517-28936600,28936937-28936980,
28937061-28937204,28937518-28937582,28937722-28937814,
28938132-28938262,28938375-28938394,28938904-28938987,
28939157-28939330,28940106-28940195,28940293-28940364,
28941318-28941365,28941458-28941570,28942786-28942849,
28942943-28943016,28943162-28943201
Length = 591
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 177 PIKSGITSPGLLSEAMEGLTIKNQPVD 257
P +G PG+L+ A+ G + PVD
Sbjct: 67 PTHAGFVGPGMLTAAVSGDVFTSPPVD 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,150,478
Number of Sequences: 37544
Number of extensions: 193605
Number of successful extensions: 520
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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