Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C18
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51926| Best HMM Match : Na_Pi_cotrans (HMM E-Value=0)               28   1.8  
SB_54436| Best HMM Match : PH (HMM E-Value=0.18)                       27   3.2  
SB_2574| Best HMM Match : DUF217 (HMM E-Value=0.066)                   27   5.5  
SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)                       27   5.5  
SB_43628| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_31409| Best HMM Match : Drf_FH1 (HMM E-Value=1.3)                   26   7.3  
SB_17191| Best HMM Match : 7tm_1 (HMM E-Value=1.7)                     26   7.3  
SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)               26   7.3  

>SB_51926| Best HMM Match : Na_Pi_cotrans (HMM E-Value=0)
          Length = 652

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = -3

Query: 292 GIQASLRLSASLSTGWFLMVSPSIASLNNPGLVIPLLMGPKLGS 161
           G+ A++ + +S ST   ++VS   AS+ + G  IP++MG  +G+
Sbjct: 178 GVLATVLVQSS-STSTSIVVSMVAASIIDVGPAIPIIMGANIGT 220


>SB_54436| Best HMM Match : PH (HMM E-Value=0.18)
          Length = 940

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 301 SSFGIQASLRLSASLSTGWFLMVSPSIASLNNPGLVIPLLMGPKLGSG 158
           SS  + +SL+L +SL  G  L + PS+   ++  L   L +GP    G
Sbjct: 262 SSLKLGSSLKLGSSLKLGSSLKLGPSLKLGSSLKLGSSLKLGPNFSGG 309


>SB_2574| Best HMM Match : DUF217 (HMM E-Value=0.066)
          Length = 225

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 210 LSEAMEGLTIKNQPVDKEA-DRRRDAWIPNDET 305
           L+E ++GLT+ N+ ++KE  + RR+    N ET
Sbjct: 143 LTERIQGLTLANENLEKEVLESRRNIEKSNQET 175


>SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)
          Length = 392

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 290 YPSISSSVCFFINWLVLNGESFHSF 216
           YP   S++CFF+N+ +    S  +F
Sbjct: 277 YPGFVSAICFFLNFFIWGKHSSGAF 301


>SB_43628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 343 PFGDDCASNRIFFVSSFGIQASLRLSASLSTGWFLMVSPSI 221
           PFGD       F   + G+ ++  L+ +    +F +V PS+
Sbjct: 91  PFGDSACQYNGFIAVTMGVSSTQTLALTSVNRYFKVVKPSL 131


>SB_31409| Best HMM Match : Drf_FH1 (HMM E-Value=1.3)
          Length = 391

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = -3

Query: 235 VSPSIASLNNPGLVIPLLMG-----PKLGSGPIVSKNVDGSGKLVAG-SGVDP 95
           V+P+I SLN    V+P L G     P L  G  V  +++G   +V   +G DP
Sbjct: 275 VAPAIPSLNGGEPVVPSLNGKDPAIPSLNGGDPVIPSLNGGEPVVPSLNGKDP 327


>SB_17191| Best HMM Match : 7tm_1 (HMM E-Value=1.7)
          Length = 111

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 343 PFGDDCASNRIFFVSSFGIQASLRLSASLSTGWFLMVSPSI 221
           PFGD       F   + G+ ++  L+ +    +F +V PS+
Sbjct: 19  PFGDSACQYNGFIAVTMGVSSTQTLALTSVNRYFKVVKPSL 59


>SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)
          Length = 684

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 114 ATSLPDPSTFFDTIGPEPNLGPIKSGITSPGLLSEAME 227
           A +L +  T   +  P P   PIKS +TSP +LS+A +
Sbjct: 308 AEALKNSKTKSPSATPSPISSPIKSPVTSP-ILSKAAQ 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,600,680
Number of Sequences: 59808
Number of extensions: 216558
Number of successful extensions: 649
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)