Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C18
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   1.6  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   1.6  
AL032654-11|CAB63389.2|  529|Caenorhabditis elegans Hypothetical...    28   2.1  
AF025461-3|AAB70998.3|  632|Caenorhabditis elegans Hypothetical ...    27   2.8  
AF025461-2|ABC71819.1|  670|Caenorhabditis elegans Hypothetical ...    27   2.8  
Z81107-5|CAB03232.1|  203|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved olig...    26   6.4  
AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical ...    26   6.4  

>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 31   PHLINNKFPKRLIFQVLSQPLVGLHRYQLQVYQIRQHFSIQSDRNLI 171
            P L+N      L+F +LS    G+H    Q+ ++RQ  S   D +L+
Sbjct: 2085 PKLVNEDIA--LLFSLLSDVFPGIHYTANQMRELRQQLSTVCDEHLL 2129


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 31   PHLINNKFPKRLIFQVLSQPLVGLHRYQLQVYQIRQHFSIQSDRNLI 171
            P L+N      L+F +LS    G+H    Q+ ++RQ  S   D +L+
Sbjct: 2085 PKLVNEDIA--LLFSLLSDVFPGIHYTANQMRELRQQLSTVCDEHLL 2129


>AL032654-11|CAB63389.2|  529|Caenorhabditis elegans Hypothetical
           protein Y52B11A.7 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
 Frame = -3

Query: 331 DCASNRIFFVSSFGIQASLRLSASLSTGWF--LMVSPSI--ASLNNPGLVIPLLMGPKLG 164
           D   + + F S     A+   +  LS   F  L++SP+I  + + +P L +P+++ P+L 
Sbjct: 349 DIVGSPLLFTSIVASPATASQALILSPVLFTSLILSPAIYGSVILSPWLFVPVILSPRLM 408

Query: 163 SGPIVSKNVDGSGKLVAGSGVDPLTV 86
           S PI+      S  +++   +DPL +
Sbjct: 409 S-PIIVSPAIFSPIVLSPLALDPLVL 433


>AF025461-3|AAB70998.3|  632|Caenorhabditis elegans Hypothetical
           protein M01D1.2a protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 204 GLLSEAMEGLTIKNQPVDKEADRRRD 281
           G L + ++ LT+ N+ ++KEAD+R +
Sbjct: 486 GTLGDVVKQLTLMNEKMEKEADQRAE 511


>AF025461-2|ABC71819.1|  670|Caenorhabditis elegans Hypothetical
           protein M01D1.2b protein.
          Length = 670

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 204 GLLSEAMEGLTIKNQPVDKEADRRRD 281
           G L + ++ LT+ N+ ++KEAD+R +
Sbjct: 486 GTLGDVVKQLTLMNEKMEKEADQRAE 511


>Z81107-5|CAB03232.1|  203|Caenorhabditis elegans Hypothetical
           protein R07H5.7 protein.
          Length = 203

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 214 VKLWKDSPLRTNQLIKKQTDEEMLGYQM 297
           +K+W+  PL+ N L+   +    +GYQ+
Sbjct: 73  IKIWEYIPLKINDLLASNSSTICMGYQV 100


>U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 5 protein.
          Length = 580

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 126 PDPSTFFDTIGPEPNLGPIKSGITSPGLLSEAMEGLTIKNQPVDKEADRRRDA 284
           P+P        PEP   PI     SP   SE    + +  + VD E  +  D+
Sbjct: 132 PEPEKVAIVEKPEPKPEPITETEASPSKASEKDAAVEVSVEKVDAETAQESDS 184


>AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical
           protein C10E2.6 protein.
          Length = 594

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -3

Query: 220 ASLNNPGLVIPLLMGPKLGSGPIVSKNVDGSG---KLVAGSGV 101
           AS     L+I LL G  LGSGP+ S   +  G     + G+GV
Sbjct: 57  ASNTMAALIISLLTGLTLGSGPLASAVCNKYGCRITTITGAGV 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,986,551
Number of Sequences: 27780
Number of extensions: 168554
Number of successful extensions: 459
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)