Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C18
(348 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12740.1 68414.m01479 cytochrome P450 family protein similar ... 29 0.64
At1g30810.1 68414.m03767 transcription factor jumonji (jmj) fami... 28 2.0
At1g24706.1 68414.m03104 expressed protein 27 2.6
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 27 4.5
At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit (... 27 4.5
At2g45380.1 68415.m05645 expressed protein similar to gi2344899|... 27 4.5
At1g03687.1 68414.m00349 DTW domain-containing protein contains ... 27 4.5
At2g46550.1 68415.m05807 expressed protein 26 6.0
At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containi... 26 6.0
At5g45960.1 68418.m05651 GDSL-motif lipase/hydrolase family prot... 26 7.9
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 26 7.9
At5g13370.1 68418.m01540 auxin-responsive GH3 family protein sim... 26 7.9
At5g09930.1 68418.m01148 ABC transporter family protein 26 7.9
>At1g12740.1 68414.m01479 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
Length = 472
Score = 29.5 bits (63), Expect = 0.64
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = -3
Query: 262 SLSTGWFLMVSPSIASLNNPGLVIPLLMGPKLGSGPIVSKNVDGSGKLVAGSGVDPLTVG 83
++ GW +MV P LN PL+ P G SK + S +A G VG
Sbjct: 366 TIPAGWAVMVCPPAVHLNPEMYKDPLVFNPSRWEG---SKVTNASKHFMAFGGGMRFCVG 422
Query: 82 TTLEKL 65
T KL
Sbjct: 423 TDFTKL 428
>At1g30810.1 68414.m03767 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains similarity to Swiss-Prot:P29375
retinoblastoma-binding protein 2 (RBBP-2) [Homo
sapiens]; contains Pfam domains PF02375: jmjN domain and
PF02373: jmjC domain; intron between exons 6 and 7 was
required to circumvent a frameshift. There could be an
underlying sequence error.
Length = 787
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 198 SPGLLSEAMEGLTIKNQPVDKEADR 272
+P L SE E +++KN P DK+ D+
Sbjct: 3 NPPLESEIKEDMSLKNHPPDKDKDK 27
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 228 GLTIKNQPVDKEADRRRDAWIPNDETK 308
G+ N+ + K ++R RD+ +PNDE K
Sbjct: 737 GMMRNNKALIKSSNRLRDSLLPNDEPK 763
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 151 VSKNVDGSGKLVAGSGVDPLTVGTTLEK 68
V++N+ + KLV G G LTV TL++
Sbjct: 397 VARNIIKNPKLVPGGGATELTVSATLKQ 424
>At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit
(Ath-B) nearly identical to gi:2827143, cellulose
synthase, catalytic subunit (Ath-B)
Length = 1065
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 177 PIKSGITSPGLLSEAMEGLTIKNQPVDKEADRRR 278
PIK P LLS+ G KN KE+D+++
Sbjct: 631 PIKVKHKKPSLLSKLCGGSRKKNSKAKKESDKKK 664
>At2g45380.1 68415.m05645 expressed protein similar to
gi2344899|AC002388
Length = 491
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 228 GLTIKNQPVDKEADRRRDAWIPNDE 302
GLTI+ P D+E + R+D I + E
Sbjct: 275 GLTIEELPSDEEVEERKDIGIDDQE 299
>At1g03687.1 68414.m00349 DTW domain-containing protein contains
Pfam PF03942: DTW domain
Length = 350
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 108 LPATSLPDPSTFFDTIGPEPNLGPIKSGITSPGLLSEAMEGLTIKNQPVDKEADRRRDAW 287
LP SL ++ + P+P+ + + GLLSE + + +DK+AD +A
Sbjct: 262 LPCISLATGASAMHKLRPQPSWDRTCTAAAAIGLLSELSLLPQLSSYELDKQADAVEEAL 321
Query: 288 I 290
+
Sbjct: 322 V 322
>At2g46550.1 68415.m05807 expressed protein
Length = 397
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 189 GITSPGLLSEAMEGLTIKNQPVDKEADRRRDAWIPNDETKKILLEA 326
G S GL ++ G TIK R +A +D +K LLEA
Sbjct: 224 GFDSDGLRDYSVSGQTIKGTSKGSSCKNRPEASSESDLSKSELLEA 269
>At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535: PPR repeat
Length = 787
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 156 GPEPNLGPIKSGITSPGLLSEAMEGLTIKNQPVDKEAD 269
G EPNL + S ++S GL+ EG ++ V +E D
Sbjct: 298 GIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELD 335
>At5g45960.1 68418.m05651 GDSL-motif lipase/hydrolase family protein
Length = 375
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -3
Query: 238 MVSPSIASLNNPGLVIPLLMGPKLGSGPIVSKNVDGSGKLVAGSGVDPLT 89
+V+ IAS +P + P LG ++S G AGSG DPLT
Sbjct: 93 LVTDFIASYIGVKENVPPYLDPNLGINELIS----GVSFASAGSGYDPLT 138
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -3
Query: 154 IVSKNVDGSGKLVAGSGVDPLTVGTTLEKLISSETCC*LNEA 29
++S ++DG+ KL A S + L V T ++ +S T C +++A
Sbjct: 365 LISSSLDGTIKLWACSENESLKVVQTRKQELSVHTLCGMHDA 406
>At5g13370.1 68418.m01540 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +3
Query: 162 EPNLGPIKSGITSPGLLSEAMEGLTIKNQPVDKEADRRRDAWIPNDETKKIL 317
+ N+GP++ + PG E M + V + R + N+E KIL
Sbjct: 522 DKNIGPLEIKVVKPGAFDELMNFFLSRGSSVSQYKTPRS---VTNEEALKIL 570
>At5g09930.1 68418.m01148 ABC transporter family protein
Length = 678
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 274 RLSASLSTGWFLMVSPSIASLNNPGLVI 191
RL AS S+GW + +S L NP L++
Sbjct: 241 RLVASFSSGWQMRMSLGKILLQNPDLLL 268
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,567,858
Number of Sequences: 28952
Number of extensions: 155060
Number of successful extensions: 371
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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