Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C17
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 46 2e-06
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 35 0.004
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 34 0.008
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 34 0.010
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.024
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 29 0.22
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 29 0.38
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 1.2
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 26 2.7
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 6.2
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 25 6.2
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 25 6.2
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 25 6.2
SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyc... 24 8.2
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 24 8.2
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 24 8.2
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 24 8.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 8.2
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 46.0 bits (104), Expect = 2e-06
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 118 DTVFILFSSGTTGLPKGVMLTHINALCAAMNFENDNMHEDKFKTMLSIVPWFHAYGLI-S 294
D + +L +SGTTG PK V LTH N LC +++ + D T ++P FH +GL+
Sbjct: 162 DVMLVLHTSGTTGRPKVVPLTHKN-LCRSIHNITTSYRLDPRDTSYVVMPLFHVHGLLCG 220
Query: 295 TINYILIKKTIVYFSGFNPQKYLNAIQEYKVNVLVAVPPI 414
++ + V F+ + +Y AVP I
Sbjct: 221 LLSTLASGGCAVVPPKFSAHSFWKEFIQYGATWYTAVPTI 260
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 35.1 bits (77), Expect = 0.004
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 115 TDTVFILFSSGTTGLPKGVMLTHINALCAAMNFEN 219
++ ++L++SG+TG PKG LTH N + + F++
Sbjct: 2870 SNLAYVLYTSGSTGKPKGCCLTHHNVVQCMLAFQD 2904
Score = 31.9 bits (69), Expect = 0.041
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 58 DIKVETDVRSYEPAEVQGWTDTVFILFSSGTTGLPKGVMLTH 183
+IKV+ ++ + E ++L++SG+TG PKGV ++H
Sbjct: 342 EIKVDDEIPPFPFPE--SLDSVAYVLYTSGSTGNPKGVAISH 381
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 34.3 bits (75), Expect = 0.008
Identities = 13/20 (65%), Positives = 19/20 (95%)
Frame = +1
Query: 130 ILFSSGTTGLPKGVMLTHIN 189
I+++SG+TGLPKGV+L+H N
Sbjct: 244 IMYTSGSTGLPKGVILSHKN 263
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 33.9 bits (74), Expect = 0.010
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Frame = +1
Query: 43 IISYSDIKVETDVRSYEPAEVQGWTDTVFILFSSGTTGLPKGVMLTHINALCAAMNFEND 222
II+Y ++ + +P D +++SG+TG PKGV+L H N + A
Sbjct: 222 IITYDNL-LSLGKEKPQPPHPPKADDICCYMYTSGSTGKPKGVVLLHRNIIAALGGINRI 280
Query: 223 -NMHEDKFKTMLSIVPWFHAYGLISTINYILIKKTIVYFS--GFNPQKYLNA---IQEYK 384
+ H + +L+ +P H + I + + + Y S +N + E++
Sbjct: 281 LSQHINVKDYVLAYLPLAHIFEFIFEMCCLYWGGVLGYASPRTLTDASVVNCKGDLTEFR 340
Query: 385 VNVLVAVPPI 414
VL+ VP +
Sbjct: 341 PTVLIGVPAV 350
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.7 bits (71), Expect = 0.024
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 34 ESGIISYSDIKVETDVRSYE--PAEVQGWTDTVFILFSSGTTGLPKGVMLTHINAL 195
E+G+ S+++ E D R+YE E G T + SSGT G PK L + ++L
Sbjct: 372 ENGVGEESEMESEIDDRNYETMEEEADGETPLAIVKASSGTKGWPKMFTLPNPSSL 427
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 29.5 bits (63), Expect = 0.22
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 88 YEPAEVQGWTDTVFILFSSGTTGLPKGVM 174
Y P V +F+L++SG+TG PKGV+
Sbjct: 256 YCPPAVVNPEHPLFLLYTSGSTGKPKGVV 284
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 28.7 bits (61), Expect = 0.38
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 79 VRSYEPAEVQGWTDTVFILFSSGTTGLPKGVMLTHIN-ALCAAMNFENDNMHEDKFKTML 255
++S + V G T + F+SG+ G+PKGV H + A + N+ E TML
Sbjct: 445 LKSEQTGVVVGPDSTPTLSFTSGSEGIPKGVKGRHFSLAYYFDWMAQEFNLSESDRFTML 504
Query: 256 S 258
S
Sbjct: 505 S 505
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 208 NFENDNMHEDKFKTMLSIVPWFHAYGLISTINYILIKKTIVY 333
NF ND E+ F+ S++ + IN ILI T+ Y
Sbjct: 339 NFSNDQKAENPFEWATSLLKTISIIDEVELINKILINYTMQY 380
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 2.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 127 FILFSSGTTGLPKGVMLTHINALCAAMNFENDNMHEDKFKTMLSIVPWFHAYGLI 291
F+ ++GT VM T NA AAM ++++ K + SI+ HA LI
Sbjct: 213 FLNLTAGTWEENGIVMPTKNNAFNAAMRENSNSVSSTKIRKQESILEKIHAQRLI 267
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.6 bits (51), Expect = 6.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 217 NDNMHEDKFKTMLSIVPWFHAYGLISTINYIL 312
N + + FK + SI+P+ + STINY+L
Sbjct: 1957 NTELCQASFKFLASILPYENVKIKESTINYLL 1988
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 24.6 bits (51), Expect = 6.2
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +1
Query: 103 VQGWTDTVFILFSSGTTGLPKGVMLTHINALCAAMNFENDNMHEDKFKTMLSIVPWFHAY 282
V+ W F F L + + I LC +++ D +D T+L +FH++
Sbjct: 186 VKEWESKPFYKFLEEVFQLSGAIEESIIYGLCQSLS--KDIPTKDALDTVLK---YFHSF 240
Query: 283 GLISTINYIL 312
G+ +Y+L
Sbjct: 241 GMYGDYSYLL 250
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.6 bits (51), Expect = 6.2
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 58 DIKVETDVRSYEPAEVQGWTDTVFILFSSGTTGLPKGVMLTHINALCAAMNFENDNMHED 237
DI + D + + G V SSG+ G+PK ++ I A N + D +
Sbjct: 504 DIGLSVDDATDAVTDADGIATNVAGSVSSGSAGIPKFTVVEGIAAPLPMANVDTDKIIPK 563
Query: 238 KF 243
+F
Sbjct: 564 QF 565
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 319 KTIVYFSGFNPQKYLNAIQEY 381
K + SG NPQK AI EY
Sbjct: 84 KVLARISGANPQKLKAAIDEY 104
>SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 219
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 250 MLSIVPWFHAYGLISTINYILIKKTIVYFSG 342
++S++P+ GL STI++ + KT+ + +G
Sbjct: 178 IVSMLPFGFMDGLFSTIDFGTLYKTVYFTAG 208
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.2 bits (50), Expect = 8.2
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Frame = +1
Query: 67 VETDVRSYEPAEVQGWTDTVFILFSSGTTGLPKGVMLTHINALCAAMN-------FENDN 225
V+ + S+EP ++ D V L+ + T + + L I+ C A+ FE
Sbjct: 760 VQDSLTSHEPVDLIMVNDEVARLYQNSTRAVDEFPTLPTISCYCVALARYVQNPLFEYAA 819
Query: 226 MHEDKFKTMLSIVPWFH 276
M D LS PW H
Sbjct: 820 MGRDLMS--LSFDPWQH 834
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 24.2 bits (50), Expect = 8.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 152 VVPDENNMNTVSVH 111
+VPDEN +N + VH
Sbjct: 54 IVPDENKVNELDVH 67
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 170 TPLGNPVVPDENNMNTVSVHPCT 102
T L NP+ P+ N V +H CT
Sbjct: 520 TILTNPIDPNSNISTPVGMHLCT 542
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 240 IQDYAVHSTMVSCIRLDIDNQLYIDKKDYSL 332
I AV + + C++ I+++ Y + DYSL
Sbjct: 3458 ISKSAVRTNIERCVQTSIESKYYKNLTDYSL 3488
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,824
Number of Sequences: 5004
Number of extensions: 34468
Number of successful extensions: 113
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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