Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C17
(416 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48304| Best HMM Match : AMP-binding (HMM E-Value=0) 81 3e-16
SB_58684| Best HMM Match : AMP-binding (HMM E-Value=0.36) 69 2e-12
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06) 64 3e-11
SB_49687| Best HMM Match : AMP-binding (HMM E-Value=7.6e-08) 51 4e-07
SB_48202| Best HMM Match : GARS_B (HMM E-Value=0.49) 43 9e-05
SB_37281| Best HMM Match : AMP-binding (HMM E-Value=3.78351e-44) 37 0.006
SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.054
SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45) 33 0.072
SB_54490| Best HMM Match : AMP-binding (HMM E-Value=4.2039e-45) 32 0.22
SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.22
SB_50949| Best HMM Match : AMP-binding (HMM E-Value=0) 32 0.22
SB_1655| Best HMM Match : Wzy_C (HMM E-Value=3.9) 32 0.22
SB_7991| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_53246| Best HMM Match : AMP-binding (HMM E-Value=7.8e-37) 30 0.67
SB_16214| Best HMM Match : AMP-binding (HMM E-Value=0) 30 0.67
SB_8167| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0) 29 1.5
SB_1852| Best HMM Match : WD40 (HMM E-Value=1.7) 29 2.0
SB_28869| Best HMM Match : AMP-binding (HMM E-Value=0) 28 2.7
SB_42438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6) 27 4.7
SB_29193| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_53506| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_48304| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 374
Score = 81.4 bits (192), Expect = 3e-16
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 115 TDTVFILFSSGTTGLPKGVMLTHINALCAAMNFENDN-MHEDKFKTMLSIVPWFHAYGLI 291
T+T + +SSGTTGL KGVM +H N + A+ + N M DK LS++P FHA+GL+
Sbjct: 134 TETACLPYSSGTTGLSKGVMQSHFNLIANALCLGSKNFMQHDKQLVTLSLMPLFHAFGLV 193
Query: 292 STIN-YILIKKTIVYFSGFNPQKYLNAIQEYKVNVLVAVPPI 414
I + + +V GF P++ L I++YKV VPP+
Sbjct: 194 INIGMHFYLGSKVVLLQGFEPEQLLKTIEKYKVTDFPMVPPL 235
>SB_58684| Best HMM Match : AMP-binding (HMM E-Value=0.36)
Length = 237
Score = 68.9 bits (161), Expect = 2e-12
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Frame = +1
Query: 118 DTVFILFSSGTTGLPKGVMLTHINALCAAM---NF---ENDNMHEDKFKTMLSIVPWFHA 279
D +IL+SSGTTGLPKGV+LTH N + A + NF ++ E + IVP FH
Sbjct: 142 DVAYILYSSGTTGLPKGVLLTHYNLISAVVILNNFWAMTSEQTTEASKIIQVLIVPMFHV 201
Query: 280 YGLISTINY-ILIKKTIVYFSGFNPQKYLNAIQEYK 384
+GL + I I T+V F+P +L AIQ+YK
Sbjct: 202 FGLAIMLGINIAIGVTMVCIRQFDPVSFLEAIQKYK 237
>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
Length = 757
Score = 64.5 bits (150), Expect = 3e-11
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Frame = +1
Query: 115 TDTVFILFSSGTTGLPKGVMLTHINALCAAMNF-ENDNMHEDKFKTMLSIVPWFHAYGLI 291
T+ + + +SSGTTG+ KGV+ +H N + A++ + M DK LS++P FHA+GL
Sbjct: 598 TEAICMPYSSGTTGVSKGVLQSHYNYIGHALSLGSKEFMQWDKRLVTLSLLPLFHAFGLA 657
Query: 292 STIN-YILIKKTIVYFSGFNPQKYLNAIQEYK 384
+ + + ++ GF P++ L I++YK
Sbjct: 658 VNVGMHFYLGSKVILLQGFEPEQLLKTIEKYK 689
>SB_49687| Best HMM Match : AMP-binding (HMM E-Value=7.6e-08)
Length = 224
Score = 50.8 bits (116), Expect = 4e-07
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 226 MHEDKFKTMLSIVPWFHAYGLISTIN-YILIKKTIVYFSGFNPQKYLNAIQEYKVNVLVA 402
M DK LS++P FHA+GL + + + ++ GF P++ L I++YKVN
Sbjct: 1 MQWDKRLVTLSLLPLFHAFGLAVNVGMHFYLGSKVILLQGFEPEQLLKTIEKYKVNDFPM 60
Query: 403 VPPI 414
VPP+
Sbjct: 61 VPPL 64
>SB_48202| Best HMM Match : GARS_B (HMM E-Value=0.49)
Length = 293
Score = 43.2 bits (97), Expect = 9e-05
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +1
Query: 43 IISYSDIKVETDVRSYEPAEVQGWTDTVFILFSSGTTGLPKGVMLTHINAL 195
IIS+SD++ YE ++ D + ++SGTTG PKG M+TH NA+
Sbjct: 232 IISFSDVEAMGKAHPYEK-KLPKPDDLAVVCYTSGTTGNPKGAMITHSNAV 281
>SB_37281| Best HMM Match : AMP-binding (HMM E-Value=3.78351e-44)
Length = 393
Score = 37.1 bits (82), Expect = 0.006
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Frame = +1
Query: 118 DTVFILFSSGTTGLPKGVMLTHIN-ALCAAMNFE-NDNMHEDKFKTMLSIVPWFHAYGLI 291
D +F+L++SG+TG PKGV+ TH L A+ F + + H + + + W + I
Sbjct: 17 DPLFMLYTSGSTGKPKGVLHTHGGYMLYTALTFRYSFDYHPGEVYWCTADIGWITGHSYI 76
Query: 292 STINYILIKKTIVYFSG--FNPQ--KYLNAIQEYKVNVLVAVP 408
T + V F G F P ++ + + +YKV+ P
Sbjct: 77 -TYGPMANGAISVLFEGTPFYPDCGRFWDIVDKYKVSKFYTAP 118
>SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 33.9 bits (74), Expect = 0.054
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Frame = +1
Query: 94 PAEVQGWTDTVFILFSSGTTGLPKGVMLTHINALCAAM---NFENDNMHEDKFKTMLSIV 264
P E D +F+L++SG+TG PKG++ T L A + D D F + I
Sbjct: 257 PPEPMDSEDPLFLLYTSGSTGQPKGIVHTQAGYLLYAKLTHKYCFDYKQGDVFGCVADI- 315
Query: 265 PWF--HAY----GLISTINYILIKKTIVYFSGFNPQKYLNAIQEYKVNVLVAVP 408
W H+Y L + +L + T Y +P +Y ++ ++N P
Sbjct: 316 GWITGHSYVVYGPLANGATTVLFESTPTY---PDPGRYWEMVERLRINQFYGAP 366
>SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)
Length = 1038
Score = 33.5 bits (73), Expect = 0.072
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +1
Query: 115 TDTVFILFSSGTTGLPKGVMLTHINALCAAMNFENDNMH 231
TD ++IL++SGTTG PKG++ + A+N+ N++
Sbjct: 285 TDPLYILYTSGTTGDPKGIVRRN-GGHAVALNWSMKNIY 322
>SB_54490| Best HMM Match : AMP-binding (HMM E-Value=4.2039e-45)
Length = 565
Score = 31.9 bits (69), Expect = 0.22
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 118 DTVFILFSSGTTGLPKGVMLTHINALCAAMNFENDNMHEDKFKTMLSIVPWFHAYGLIST 297
D V ++F+SG+TG PK V T +A+ +M H+D++ IV W + L+
Sbjct: 196 DPVAVVFTSGSTGEPKAVTFTQ-HAIVNSMT-TGSFKHDDRYFMARPIV-WISGFTLLCA 252
Query: 298 I 300
+
Sbjct: 253 V 253
>SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 31.9 bits (69), Expect = 0.22
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +1
Query: 28 PLESGIISYSDIKVETD-----VRSYEPAEVQGWTDTVFILFSSGTTGLPKGVMLTH 183
P + + SYSD+ ++ V S AEVQ + D I+ +SG+TG PK + TH
Sbjct: 142 PNKPKVYSYSDLLEASEPYDLAVLSQVEAEVQ-FDDPFLIIHTSGSTGKPKPALYTH 197
>SB_50949| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 569
Score = 31.9 bits (69), Expect = 0.22
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 70 ETDVRSYEPAEVQ-GWTDTVFILFSSGTTGLPKGVMLTH 183
+ D+ AE + + D ++F+SG+TG PK ++ TH
Sbjct: 172 DDDITQLHQAETEVQFDDPALVIFTSGSTGRPKPILYTH 210
>SB_1655| Best HMM Match : Wzy_C (HMM E-Value=3.9)
Length = 194
Score = 31.9 bits (69), Expect = 0.22
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 40 GIISYSDIKVETDVRSYEPAEVQGWTDTVFIL-FSSGTTGLPK 165
G S D+ E D SY + W + V L +SSGTTGLPK
Sbjct: 151 GCKSLFDLLHEDDGGSYPVSVSVNWKEDVVCLPYSSGTTGLPK 193
>SB_7991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 30.7 bits (66), Expect = 0.50
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 43 IISYSDIKVETDVRS----YEPAEVQGWTDTVFILFSSGTTGLPKGVMLTH 183
+ SY D+ + D S AEVQ D ++F+SG+TG+PK + T+
Sbjct: 164 LYSYEDLVQQGDDTSSALKQAQAEVQ-MDDHALVIFTSGSTGIPKPIQFTN 213
>SB_53246| Best HMM Match : AMP-binding (HMM E-Value=7.8e-37)
Length = 497
Score = 30.3 bits (65), Expect = 0.67
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +1
Query: 100 EVQGWTDTVFILFSSGTTGLPKGVMLTHINALCA 201
EVQ D I+F+SG+TGLPK V T CA
Sbjct: 143 EVQ-MDDPAVIIFTSGSTGLPKLVQHTSHTLACA 175
>SB_16214| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 549
Score = 30.3 bits (65), Expect = 0.67
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +1
Query: 100 EVQGWTDTVFILFSSGTTGLPKGVMLTHINALCA 201
EVQ D I+F+SG+TGLPK V T CA
Sbjct: 173 EVQ-MDDPAVIIFTSGSTGLPKLVQHTSHTLACA 205
>SB_8167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 127 FILFSSGTTGLPKGVMLTH 183
+I+++SG+TG PKGV + H
Sbjct: 35 YIIYTSGSTGQPKGVEIEH 53
>SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +1
Query: 118 DTVFILFSSGTTGLPKGVMLTHINALCAAMNFENDNMHEDKFKTMLSIVPWFHAYGLIST 297
D + +++SGTTGLPK ++ + A + + + +P +H+ I
Sbjct: 246 DVLMYIYTSGTTGLPKAALIRNSRYFMATGLY--PLLGGTTKDVVYCPLPLYHSAAGILA 303
Query: 298 INYILIK-KTIVYFSGFNPQKYLNAIQEYKV 387
+ Y ++ T+V F+ ++ + E+ V
Sbjct: 304 VGYCIVHGSTLVLRKKFSASRFWDECIEHNV 334
>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 1381
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 127 FILFSSGTTGLPKGVMLTH 183
+I+++SG+TG PKGV + H
Sbjct: 183 YIIYTSGSTGQPKGVEIEH 201
>SB_1852| Best HMM Match : WD40 (HMM E-Value=1.7)
Length = 513
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 97 AEVQGWTDTVFILFSSGTTGLPKGVMLTH 183
AEV+ D +LF+SG+TG PK +M T+
Sbjct: 456 AEVK-MEDPFVVLFTSGSTGRPKPIMYTN 483
>SB_28869| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 561
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 100 EVQGWTDTVFILFSSGTTGLPKGVMLTH 183
EVQ TVFI F+SG+TG+PK TH
Sbjct: 180 EVQFDDLTVFI-FTSGSTGIPKPCEYTH 206
>SB_42438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 61 IKVETDVRSYEPAEVQGWTDTVFILFSSGTTGLPK 165
++ E Y P D ++++SSGTTG PK
Sbjct: 250 LQKENKELGYLPPVESSLDDLAYVVYSSGTTGKPK 284
>SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6)
Length = 379
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 139 SSGTTGLPKGVMLTHINALCAAMNFENDNMHEDKFKTMLSIVPWFHAYGLISTINYIL 312
++ + + K + L+ I LC+ ++NM +D FKT +P A G ++ Y+L
Sbjct: 170 NTSNSKIEKRLALSTI-VLCSIGRDIDENMSDDAFKTHFVSLPVCLAKGTVALTRYVL 226
>SB_29193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 373
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 286 LISTINYILIKKTIVYFSGFNPQKYLNAIQEYKVNVLV-AVPPI 414
L+S + I KT+ Y S F P++ L I N LV + PP+
Sbjct: 154 LVSVNRFFRIVKTVQYRSKFTPRRTLVYILAVWCNALVGSTPPL 197
>SB_53506| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +1
Query: 202 AMNFENDNMHEDKFKTMLSIVPWFHAYGLISTINYILIKKTIVYFSGFNPQKYLNAIQEY 381
++ +ND++ ++ F + S++P +YGL+ N ++K + F N +QE
Sbjct: 160 SLKHQNDDLTKN-FVLVASVIPNHISYGLVLARNSSKLQKCLGNFMEMNENWRYRLLQEN 218
Query: 382 KVNVLVAVPP 411
+ V + P
Sbjct: 219 AGSKKVEISP 228
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,827,381
Number of Sequences: 59808
Number of extensions: 250648
Number of successful extensions: 719
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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