Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C17
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   3.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   3.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   3.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   3.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   5.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   7.4  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +1

Query: 70  ETDVRSYEPAEVQGWTDTVFI 132
           E D ++  P+++  W D +F+
Sbjct: 58  EYDYKNNYPSDIDQWHDKIFV 78


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 94  PAEVQGWTDTVFILFSSGTTGLPKGV 171
           P  +Q W D VFI       G+P  +
Sbjct: 53  PNGMQIWNDKVFITIPRWKNGVPSNL 78


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +1

Query: 70  ETDVRSYEPAEVQGWTDTVFI 132
           E D ++  P+++  W D +F+
Sbjct: 58  EYDYKNNYPSDIDQWHDKIFV 78


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +1

Query: 70  ETDVRSYEPAEVQGWTDTVFI 132
           E D ++  P+++  W D +F+
Sbjct: 58  EYDYKNNYPSDIDQWHDKIFV 78


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 94  PAEVQGWTDTVFILFSSGTTGLP 162
           P  ++ W D VFI       G+P
Sbjct: 189 PLGLEVWRDKVFITLPKWKDGIP 211


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 107 KDGQTQCSYCSRLELRDYLRE*C 175
           K+   QC Y +  E+  Y+R  C
Sbjct: 217 KNAVYQCKYGNNCEIDMYMRRKC 239


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 107 KDGQTQCSYCSRLELRDYLRE*C 175
           K+   QC Y +  E+  Y+R  C
Sbjct: 14  KNAVYQCKYGNNCEIDMYMRRKC 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,221
Number of Sequences: 438
Number of extensions: 2303
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)