Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C16
(391 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 30 0.15
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 27 1.4
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 3.1
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 5.5
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 5.5
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 25 5.5
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c... 24 7.2
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 24 9.5
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 24 9.5
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 24 9.5
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 24 9.5
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 29.9 bits (64), Expect = 0.15
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 86 NTFTVSPCQSHISQKHGTQRLKQNIHAVISWLSVKHYLVRTLKQM 220
N+F + S+I H + + +IHA+IS ++V+ YL L++M
Sbjct: 127 NSFVLMQTVSNIVNLHRLKSMDSDIHALIS-MAVRDYLANLLQKM 170
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 1.4
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 124 SETWDPEAKAEYPRSN----KLVIRQALLGPDAKADELNVVQVETMSLQESVKIPVAVLK 291
SE + A +P +N + + LL K + N ++ +++K + VL+
Sbjct: 265 SEGFHHRASRYWPITNLDSFSTISEKELLNYSKKQELTNFIENSIRKKIQTIKNLIPVLQ 324
Query: 292 AGETRHARLDFEFPDA 339
+ HAR+DF+ D+
Sbjct: 325 EMDKEHARIDFDNVDS 340
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 3.1
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 223 LNVVQVETMSLQESVKIPVA---VLKAGETRHARLDFEFPDAPVIFTLIQGSG 372
LN +Q T+SL+ S++I V+ H R++ F + + L++G+G
Sbjct: 556 LNEIQKSTLSLK-SLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVEGAG 607
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 24.6 bits (51), Expect = 5.5
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 124 SETW--DPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQV 240
SE W + AE KL+ Q L+G DAK D L ++ V
Sbjct: 540 SENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMV 579
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 5.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 5 EVCVH*PASHVNVSQNLNKLVKSP*RTNTFTVSPCQSHISQKHGTQRLK 151
E C + N+ + L + K R +S ++ +SQKH T+R K
Sbjct: 34 EECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEADLSQKHATERQK 82
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 24.6 bits (51), Expect = 5.5
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -3
Query: 356 RVNMTGASGNSKSKRACLVSPAFNTAT---GIFTDSC 255
++N A NSK+K++ ++ TAT G DSC
Sbjct: 695 KLNKAAAVENSKAKKSVVIKKVSGTATLNLGNVKDSC 731
>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 429
Score = 24.2 bits (50), Expect = 7.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 32 HVNVSQNLNKLVKSP*RTNTFTVSPCQSHISQKHGTQRLKQNIHAVISW 178
HV + L K ++ + N + +SH+S K + LK AV+S+
Sbjct: 300 HVQNAFALAKYLEKHPKVNWVSYPGLESHVSHKLAKKYLKNGYGAVLSF 348
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 338 HLSYSLLYRVQDLFI*LV 391
HL YSL YR Q L++ L+
Sbjct: 169 HLLYSLAYRAQWLYLILI 186
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 102 DTVKVFVRHGDFTNLLRFC 46
DT+K+F R + NL R C
Sbjct: 265 DTLKIFRRRSKYFNLARSC 283
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 64 SEIAMTYEYFYGVTLSESHQSETWD 138
SE A +YE +G+T +H + +WD
Sbjct: 862 SEFA-SYETQFGITKRPTHYNTSWD 885
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 338 HLSYSLLYRVQDLFI*LV 391
HL YSL YR Q L++ L+
Sbjct: 169 HLLYSLAYRAQWLYLILI 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,969
Number of Sequences: 5004
Number of extensions: 24442
Number of successful extensions: 67
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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