Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C16
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512...    31   0.25 
07_03_0915 + 22556522-22556536,22557719-22558177,22559796-225602...    28   3.0  
07_03_0914 + 22554314-22554328,22554586-22555065                       28   3.0  
12_01_0431 + 3396661-3397283,3399679-3399775                           26   9.2  
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    26   9.2  
03_01_0018 - 157657-158487                                             26   9.2  

>10_08_0850 +
           21050164-21050189,21050874-21050979,21051186-21051257,
           21051775-21051828,21052077-21052184,21052653-21052802,
           21052914-21053258,21053361-21054801,21054844-21055675,
           21057060-21057325,21057530-21059603,21060172-21060442,
           21060556-21060990
          Length = 2059

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
 Frame = +1

Query: 7   GLCALTGVARERVAKSQ*ISEIAMTYEYFYGVTLSESHQSETWDPEAKAEYPRSNKLVIR 186
           G C    +   ++A+ Q + EI  TY     + LSE       D   +   P S+ L  +
Sbjct: 681 GFCLFNILEEAKIAEDQVLYEIVSTYSSERRLVLSELSSGLATDANVEGRVPLSSCLQKQ 740

Query: 187 QALLGPDAKADELNV-VQVETMSLQESVKIPVAVLKAGET 303
             LL      +   V VQVE + L  S +      K G+T
Sbjct: 741 PDLLMDSTDDNHGRVAVQVEEVKLMISGREETKKTKKGQT 780


>07_03_0915 +
           22556522-22556536,22557719-22558177,22559796-22560254,
           22561869-22562348
          Length = 470

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 157 YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 261
           Y RSN LV+R    G   K  E  ++ VET ++ E
Sbjct: 100 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 134



 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 157 YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 261
           Y RSN LV+R    G   K  E  ++ VET ++ E
Sbjct: 253 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 287



 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 157 YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 261
           Y RSN LV+R    G   K  E  ++ VET ++ E
Sbjct: 406 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 440


>07_03_0914 + 22554314-22554328,22554586-22555065
          Length = 164

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 157 YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 261
           Y RSN LV+R    G   K  E  ++ VET ++ E
Sbjct: 100 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 134


>12_01_0431 + 3396661-3397283,3399679-3399775
          Length = 239

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 231 CSGGDNVITGVGKNTSRSI 287
           CSGGD VI+ V K   RSI
Sbjct: 200 CSGGDGVISTVEKEWRRSI 218


>07_03_1503 +
           27017933-27018063,27019668-27019727,27019996-27020101,
           27020254-27020325,27021008-27021061,27021707-27021856,
           27022206-27022547,27022651-27024684,27024706-27024947,
           27025658-27026235,27026329-27028183,27028533-27028851,
           27028980-27029417
          Length = 2126

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 37  ERVAKSQ*ISEIAMTYEYFYGVTLSESHQSETWDPEAKAEYPRSN 171
           +R+ + Q + E+  TY     + LSE    + +D  ++ EY  S+
Sbjct: 703 DRITEEQHLYEMMSTYSSERRLVLSELSTGQAFDANSRGEYASSS 747


>03_01_0018 - 157657-158487
          Length = 276

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 298 ETRHARLDFEFPDAPVIFTLIQGSGPVHL 384
           + + AR+  EFP   V F + +GS PV+L
Sbjct: 161 DVQFARVPCEFPGLKVGFHVEEGSSPVYL 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,666,546
Number of Sequences: 37544
Number of extensions: 167564
Number of successful extensions: 446
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)