Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C16
         (391 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)         43   8e-05
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  29   1.8  
SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_10769| Best HMM Match : AnfG_VnfG (HMM E-Value=0.76)                27   4.1  
SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)                27   4.1  
SB_6583| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.4  
SB_48360| Best HMM Match : EGF (HMM E-Value=0.1)                       27   7.2  
SB_2972| Best HMM Match : PA (HMM E-Value=1.8)                         27   7.2  
SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)                       27   7.2  
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)                       27   7.2  
SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)           26   9.5  
SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  

>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
          Length = 282

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
 Frame = +1

Query: 85  EYFYGVTLSESHQSETWDPEAKAEYPR----SNKLVIRQALLGPDAKADELNVVQVETMS 252
           E F+G  LS+S  + TW+PE   E        +KLV+ QA LG  +KA   ++V+V +M 
Sbjct: 7   EDFWGCVLSKSEDTVTWNPEFDGEDTLLGQIEHKLVLSQACLG--SKATGKSMVEVTSMD 64

Query: 253 LQ-ESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQG 366
            + +     +  L+ G T    L+  F   PV F L  G
Sbjct: 65  FKGDDSTHTIVSLREGATEMCALNLAF-SPPVTFKLASG 102


>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 169 NKLVIRQALLGPDAKADELNVVQVETMSLQ 258
           NKLV+ Q LLG  AK + + +++ E   L+
Sbjct: 304 NKLVLEQQLLGLSAKEERIEILEEENKKLK 333


>SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 359 IRVNMTGASGNSKSKRACLVSPAFNTATGIFTDSCNDI 246
           I VN   AS N    R C +S    T++G   ++CND+
Sbjct: 538 ILVNYFTASPNMTGFRLCQISVLNKTSSGQTEEACNDL 575


>SB_10769| Best HMM Match : AnfG_VnfG (HMM E-Value=0.76)
          Length = 88

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 208 AKADELNVVQVETMSLQESVKIPVAVLKAGETRHAR 315
           AK+ E NV+  +  SLQ+S++  +  L A + +HAR
Sbjct: 53  AKSAENNVLSEQVTSLQDSLQHRLVELSALQQQHAR 88


>SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)
          Length = 324

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 208 AKADELNVVQVETMSLQESVKIPVAVLKAGETRHAR 315
           AK+ E NV+  +  SLQ+S++  +  L A + +HAR
Sbjct: 127 AKSAENNVLSEQVTSLQDSLQHRLVELSALQQQHAR 162


>SB_6583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 104 PCQSHISQKHGTQRLKQNIHAVISWLSVKHYLV 202
           PC++        Q L Q+ H V++ L + H+LV
Sbjct: 53  PCETPKHLMEDLQSLAQDTHEVLASLKINHFLV 85


>SB_48360| Best HMM Match : EGF (HMM E-Value=0.1)
          Length = 594

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 264 GKNTSRSIESRRDKTCTLGL*VPRCTCHIHSYTG 365
           GK  S+   SRR  TC  G+    C CH+  Y G
Sbjct: 516 GKENSQFTWSRRKGTCIDGINNYTCRCHV-GYKG 548


>SB_2972| Best HMM Match : PA (HMM E-Value=1.8)
          Length = 151

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +1

Query: 115 SHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQESVKIPVAVLKA 294
           S+++E   P AKA+ P         A +G + K  +    QVE   L++ V+   A+L+A
Sbjct: 91  SNEAEGKQPSAKAQVPEDKVKAPSGAQVGTEGKVQDPVTAQVE--ELKKRVEEEEALLQA 148


>SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 220 ELNVVQVETMSLQESVKIPVAVLKAG-ETRHAR--LDFEFPDAP 342
           ELN   VET SLQ S++  + +L  G   +H    L F+FP  P
Sbjct: 399 ELNKTFVETRSLQTSIRDLLPLLPEGVPEKHPSWPLGFQFPFQP 442


>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 125 QKHGTQRLKQNIHAVISWLSVKHYL-VRTLKQMSLMLFRWRQ 247
           QKHG  ++KQ I+    W+S K  + +  +K   L LF  R+
Sbjct: 30  QKHGISQIKQLINEQRIWISEKELMCLYGIKSNFLTLFALRK 71


>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 125 QKHGTQRLKQNIHAVISWLSVKHYL-VRTLKQMSLMLFRWRQ 247
           QKHG  ++KQ I+    W+S K  + +  +K   L LF  R+
Sbjct: 30  QKHGISQIKQLINEQRIWISEKELMCLYGIKSNFLTLFALRK 71


>SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)
          Length = 969

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 80  RTNTFTVSPCQSHISQKHGTQRLKQNIHAVIS 175
           + N FT SP     S++ GT  + +NI +VIS
Sbjct: 552 KLNHFTGSPSVRTSSERPGTISINENIKSVIS 583


>SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 2   HEVCVH*PASHVNVSQNLNKLVKSP*RTNTFTVSPCQSHISQKHGTQRLKQNIH 163
           HE+ +  P   +  +QNLN+L K P    +  +   +  +S+ H  + +  N+H
Sbjct: 26  HELTIEGPRERLEQTQNLNQLTKYPNVLPSIEIKNARG-LSEAH-IESISLNLH 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,392,216
Number of Sequences: 59808
Number of extensions: 198125
Number of successful extensions: 463
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)