Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C16
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical p...    27   6.2  
U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    27   6.2  
AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    27   6.2  

>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 136 DPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQ 258
           + EA A   R+ K +   ALL PDA  D  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical
           protein F22D6.3a protein.
          Length = 545

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 112 ESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQESVKIPVAVLK 291
           +S + E+W+P AKA   ++ K    +      A   E    + +  +L+E+ KI  ++ K
Sbjct: 44  KSEEGESWEPAAKAAIKKAVKKYEAEVKKLEKAGCREKEAEEAQHAALEEAKKITFSLDK 103

Query: 292 A 294
           +
Sbjct: 104 S 104


>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +2

Query: 29  SHVNVSQNLNKLVKSP*RTNTFTVSPCQSHISQKHGTQRLKQNIHAVISWLSVKHYLVRT 208
           SHV + +++N+++KS     +  V      +     T  LK +   VI+  SV   L+  
Sbjct: 197 SHVKLVESVNRILKSMIVVISLYVCTWFLALLVIFCTYVLKMDNPFVIALESVTGSLILC 256

Query: 209 LKQMSLMLFRWRQCHYR 259
              M++ ++ WR   YR
Sbjct: 257 NSSMNIFIYFWRTPEYR 273


>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
 Frame = +2

Query: 44  SQNLNKLVKSP*RTNTFTVSPCQSHI--SQKHGTQRL-KQNIHAVISWLSVKHYLVRTLK 214
           SQNL  L+KS     +F+V+  Q  I  SQ+H    L  Q     +  + ++H   + +K
Sbjct: 344 SQNLANLIKSSSHVRSFSVTTTQQPIRFSQQHYQVNLDNQPSTGQVLQMQMQHQ--KRMK 401

Query: 215 QMSLMLFRWRQCHYRSR*KYQSQY*KQERQDMHAWTLSSPMH 340
           QM       +     +  + Q Q  +Q  Q   A   SSP++
Sbjct: 402 QMQEQQAAQQAAAAAAAQQQQQQQQQQGMQMQQAQFSSSPIN 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,208,462
Number of Sequences: 27780
Number of extensions: 147130
Number of successful extensions: 405
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)