Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C16
         (391 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75130.1 68414.m08725 cytochrome P450 family protein similar ...    30   0.48 
At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    29   1.1  
At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogen...    28   1.9  
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    27   3.4  
At3g08030.2 68416.m00981 expressed protein contains Pfam profile...    27   4.5  
At3g08030.1 68416.m00980 expressed protein contains Pfam profile...    27   4.5  
At3g58050.1 68416.m06471 expressed protein                             27   5.9  
At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas...    27   5.9  
At4g19850.1 68417.m02909 lectin-related low similarity to PP2 le...    26   7.8  
At2g27670.1 68415.m03353 hypothetical protein contains Pfam prof...    26   7.8  
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t...    26   7.8  

>At1g75130.1 68414.m08725 cytochrome P450 family protein similar to
           Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus]
          Length = 505

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +1

Query: 118 HQSETWDPEAKAEYPRSNKLVIRQ-ALLGPDAKADELNVVQVETMSLQESVKIPVAVLKA 294
           H  ETW  +A+   PR  +   +Q ALL P        V Q   +++ E+  +   +LK 
Sbjct: 414 HDKETWGDDAEEFNPRRFEDPKKQSALLVPFGLGPRTCVGQ--NLAVNEAKTVLATILKY 471

Query: 295 GETRHARLDFEFPDAPVIFTLIQGSGPVHLI 387
              R   L   +  APV+F  +Q     HL+
Sbjct: 472 YSFR---LSPSYAHAPVLFVTLQPQNGAHLL 499


>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
           PF03568: Peptidase family C50
          Length = 1773

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 119 ISQKHGTQRLKQNI-HAVISWLSVKHYLVRTLKQMSLMLFRW 241
           I QK   ++++QNI H + +WLS +H L+R L     ++ +W
Sbjct: 534 ILQKCSRRKIRQNIVHILENWLSAEH-LIRRLPGPEAIVKQW 574


>At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogenase
           family protein contains Pfam profile PF00107:
           oxidoreductase, zinc-binding dehydrogenase family
          Length = 386

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 20/85 (23%), Positives = 34/85 (40%)
 Frame = +1

Query: 91  FYGVTLSESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQESVK 270
           F  ++ S    S   +  A A  P+  K  +     G D    E N+V  E    Q  +K
Sbjct: 52  FLKISASSQSASAAVNVTADASIPKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIK 111

Query: 271 IPVAVLKAGETRHARLDFEFPDAPV 345
           +  A L   + +  +  F+  D+P+
Sbjct: 112 VVAAALNPVDAKRRQGKFKATDSPL 136


>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 234 SGGDNVITGVGKNTSRSIESRRDKTCTLGL*VPRCTCHIHSYTGFRT 374
           S G NVI+GV K  +++         +L     R +CH H Y   +T
Sbjct: 470 SAGGNVISGVNKGKAKTFRI----ALSLAHGSVRVSCHFHHYRSLKT 512


>At3g08030.2 68416.m00981 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 323

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 205 DAKADELNVVQVETMSLQESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQG 366
           DAK D    + VE  + ++++K+P   +  G  + A   F+  +A    T   G
Sbjct: 244 DAKNDCHGSMMVEAFAARDTLKVPHTSVGGGHVKTASFKFKAVEARTRITFFSG 297


>At3g08030.1 68416.m00980 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 365

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 205 DAKADELNVVQVETMSLQESVKIPVAVLKAGETRHARLDFEFPDAPVIFTLIQG 366
           DAK D    + VE  + ++++K+P   +  G  + A   F+  +A    T   G
Sbjct: 286 DAKNDCHGSMMVEAFAARDTLKVPHTSVGGGHVKTASFKFKAVEARTRITFFSG 339


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 103 TLSESHQSETWDPEAKAEYPRSN 171
           T    H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative similar to
           SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profiles
           PF02222: ATP-grasp domain, PF00731: AIR carboxylase
          Length = 642

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 50  NLNKL-VKSP*RTNTFTVSPCQSHISQKHGTQRLKQNIHAV 169
           NL KL   S  + NT +  PC SH +      R  +++H V
Sbjct: 48  NLQKLPTSSSGKLNTASAVPCSSHDASPISENRENKHVHGV 88


>At4g19850.1 68417.m02909 lectin-related low similarity to PP2
           lectin polypeptide [Cucurbita maxima] GI:410437
          Length = 194

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = +2

Query: 95  TVSPCQSHISQKHGTQRLKQNIHAVISWLSVKH 193
           TVS C   ISQ HG Q LKQ    V S +  KH
Sbjct: 8   TVSCCTREISQLHG-QSLKQINIGVGSLILTKH 39


>At2g27670.1 68415.m03353 hypothetical protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 293

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 136 DPEAKAEYPRSNKLVIRQALL--GPDAK 213
           DP+ KAEY +++  V RQA L  GP+ K
Sbjct: 54  DPKLKAEYKKNHSHVNRQARLWSGPNNK 81


>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
           RNA-binding protein GB:AAA86641 GI:1174153 from
           [Arabidopsis thaliana]
          Length = 314

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 121 QSETWDPEAKAEYPRSNKLVIRQALLGPDAK 213
           +S+   P++K EY +  KLV     L P+AK
Sbjct: 35  ESDDLKPKSKPEYDQMKKLVAMFKKLNPEAK 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,692,001
Number of Sequences: 28952
Number of extensions: 134133
Number of successful extensions: 355
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)