Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C15
(354 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 0.64
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 0.64
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 0.64
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 0.64
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 0.64
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 0.64
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 0.64
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 0.64
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 0.64
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 0.64
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 0.64
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 0.85
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.1
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 26 2.0
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 3.4
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 25 3.4
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 4.5
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 24 6.0
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 7.9
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 24 7.9
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 24 7.9
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 24 7.9
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.64
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 NIGMSDVNTDTLDLRKVRSPVKSVD--NLQPSKVTITHEANQPEVIIPTNESKFEVPILP 282
NI +S + KV + VK + ++ IT E N ++ P +FEV +
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 283 EQCEFPMDYSNLPPKKKRKL 342
E P+ LPP K + +
Sbjct: 409 ENYRLPIRNYPLPPGKMQAM 428
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.64
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 NIGMSDVNTDTLDLRKVRSPVKSVD--NLQPSKVTITHEANQPEVIIPTNESKFEVPILP 282
NI +S + KV + VK + ++ IT E N ++ P +FEV +
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 283 EQCEFPMDYSNLPPKKKRKL 342
E P+ LPP K + +
Sbjct: 409 ENYRLPIRNYPLPPGKMQAM 428
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.64
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 NIGMSDVNTDTLDLRKVRSPVKSVD--NLQPSKVTITHEANQPEVIIPTNESKFEVPILP 282
NI +S + KV + VK + ++ IT E N ++ P +FEV +
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 283 EQCEFPMDYSNLPPKKKRKL 342
E P+ LPP K + +
Sbjct: 409 ENYRLPIRNYPLPPGKMQAM 428
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.64
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 NIGMSDVNTDTLDLRKVRSPVKSVD--NLQPSKVTITHEANQPEVIIPTNESKFEVPILP 282
NI +S + KV + VK + ++ IT E N ++ P +FEV +
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 283 EQCEFPMDYSNLPPKKKRKL 342
E P+ LPP K + +
Sbjct: 409 ENYRLPIRNYPLPPGKMQAM 428
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.64
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 NIGMSDVNTDTLDLRKVRSPVKSVD--NLQPSKVTITHEANQPEVIIPTNESKFEVPILP 282
NI +S + KV + VK + ++ IT E N ++ P +FEV +
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 283 EQCEFPMDYSNLPPKKKRKL 342
E P+ LPP K + +
Sbjct: 409 ENYRLPIRNYPLPPGKMQAM 428
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.64
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 NIGMSDVNTDTLDLRKVRSPVKSVD--NLQPSKVTITHEANQPEVIIPTNESKFEVPILP 282
NI +S + KV + VK + ++ IT E N ++ P +FEV +
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 283 EQCEFPMDYSNLPPKKKRKL 342
E P+ LPP K + +
Sbjct: 409 ENYRLPIRNYPLPPGKMQAM 428
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.64
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 NIGMSDVNTDTLDLRKVRSPVKSVD--NLQPSKVTITHEANQPEVIIPTNESKFEVPILP 282
NI +S + KV + VK + ++ IT E N ++ P +FEV +
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 283 EQCEFPMDYSNLPPKKKRKL 342
E P+ LPP K + +
Sbjct: 409 ENYRLPIRNYPLPPGKMQAM 428
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.64
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 NIGMSDVNTDTLDLRKVRSPVKSVD--NLQPSKVTITHEANQPEVIIPTNESKFEVPILP 282
NI +S + KV + VK + ++ IT E N ++ P +FEV +
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 283 EQCEFPMDYSNLPPKKKRKL 342
E P+ LPP K + +
Sbjct: 409 ENYRLPIRNYPLPPGKMQAM 428
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.64
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 NIGMSDVNTDTLDLRKVRSPVKSVD--NLQPSKVTITHEANQPEVIIPTNESKFEVPILP 282
NI +S + KV + VK + ++ IT E N ++ P +FEV +
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 283 EQCEFPMDYSNLPPKKKRKL 342
E P+ LPP K + +
Sbjct: 409 ENYRLPIRNYPLPPGKMQAM 428
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.64
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 NIGMSDVNTDTLDLRKVRSPVKSVD--NLQPSKVTITHEANQPEVIIPTNESKFEVPILP 282
NI +S + KV + VK + ++ IT E N ++ P +FEV +
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 283 EQCEFPMDYSNLPPKKKRKL 342
E P+ LPP K + +
Sbjct: 409 ENYRLPIRNYPLPPGKMQAM 428
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 0.64
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 NIGMSDVNTDTLDLRKVRSPVKSVD--NLQPSKVTITHEANQPEVIIPTNESKFEVPILP 282
NI +S + KV + VK + ++ IT E N ++ P +FEV +
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 283 EQCEFPMDYSNLPPKKKRKL 342
E P+ LPP K + +
Sbjct: 409 ENYRLPIRNYPLPPGKMQAM 428
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.1 bits (57), Expect = 0.85
Identities = 22/88 (25%), Positives = 37/88 (42%)
Frame = +1
Query: 46 KI*QRTEPYNRGEYTYQYSPANIGMSDVNTDTLDLRKVRSPVKSVDNLQPSKVTITHEAN 225
K+ Q T Y +++ P + S +NT +R P+ ++D I
Sbjct: 849 KLHQVTCSYISIRIPHKFIPFILIESAINTVKAAIRVSAEPL-TIDQQHDLAEEIKQPRV 907
Query: 226 QPEVIIPTNESKFEVPILPEQCEFPMDY 309
P + I + + KFEV P +C M+Y
Sbjct: 908 VPHIQIKSTKFKFEVDDDPFECRLGMNY 935
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 1.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 172 KSVDNLQPSKVTITH-EANQPEVIIPTNESKFEVPIL-PEQCEFPMDYS 312
K+ NL + + T E PEV +P N VP++ PEQ + + Y+
Sbjct: 146 KASSNLSLASLAKTQPERATPEVCVPLNPDTGSVPLIHPEQTDRGLPYA 194
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.8 bits (54), Expect = 2.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 147 SQKSQITSEKCR*FTTIKSNDHTRSESTRSNNT 245
+Q S IT EK R TT+ S+ + + T NNT
Sbjct: 313 TQYSGITEEKLRNVTTVLSDVQSYLKKTVDNNT 345
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.0 bits (52), Expect = 3.4
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 229 PEVIIPTNES-KFEVPILPEQCEFPMDYSNLPPKKKRKLIEY 351
PE + N+S + E ++ E P + S++ PK R IEY
Sbjct: 490 PERLCTENQSTENEDQANLKESELPKEKSDIQPKNSRSTIEY 531
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 235 VIIPTNESKFEVPILPEQCEFPMDYSNLPPKKK 333
+II ++ +E FP DY +PPK K
Sbjct: 41 MIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMK 73
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 24.6 bits (51), Expect = 4.5
Identities = 10/44 (22%), Positives = 21/44 (47%)
Frame = +1
Query: 145 DLRKVRSPVKSVDNLQPSKVTITHEANQPEVIIPTNESKFEVPI 276
D + +S + D + + H A + ++II + F++PI
Sbjct: 245 DAQVAKSRISQTDTWDETFIFDVHRAKEFQIIIYEKKKDFDIPI 288
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 24.2 bits (50), Expect = 6.0
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +1
Query: 103 PANIGMSDVNTDTLDLRKVRSPVKSVDNLQPSKVTITHEANQPEVIIPTNESKFEVPILP 282
P++ G S +TD R +S K V + PSKV I + + I ++ +V ++
Sbjct: 113 PSSKGSSLSSTDYNGDRSYKSLQKFVSDSIPSKVKILTSEAKTQKFIQDAQNSSKVILIS 172
Query: 283 EQCEFPMDYSNL 318
++ + + Y +L
Sbjct: 173 QKMKPTLLYKSL 184
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 23.8 bits (49), Expect = 7.9
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Frame = +1
Query: 64 EPYNRGEYTYQYSPANIGMSDVNTDTLDLRKVRSPVKSVDNLQPSKVTITHEANQP-EVI 240
+P G+Y Q P S +T + PV+S QPS + P +
Sbjct: 361 QPAQPGQYNQQSQPVQSYQSGQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGVPAPPM 420
Query: 241 IPTNESKFEVPILPEQ 288
P +++ P P Q
Sbjct: 421 QPVQSTQYYQPSSPVQ 436
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 158 TFLRSNVSVFTSLIPILAGEYW 93
T L+SN S+ S + L GE W
Sbjct: 120 TLLKSNPSINNSQVSKLVGEMW 141
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 158 TFLRSNVSVFTSLIPILAGEYW 93
T L+SN S+ S + L GE W
Sbjct: 120 TLLKSNPSINNSQVSKLVGEMW 141
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 23.8 bits (49), Expect = 7.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 282 GTMRISDGLQQLAAEKEKKINRVP 353
G+MRISD + LAA K + I+ P
Sbjct: 495 GSMRISDIQELLAAYKREGIDPAP 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,523
Number of Sequences: 5004
Number of extensions: 27676
Number of successful extensions: 103
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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