Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C15
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0194 - 19107143-19108055,19110864-19111132 29 0.79
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 28 1.8
02_01_0005 + 34436-34498,34578-35120,35566-35643,35823-35915,360... 27 4.2
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 26 7.4
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 26 7.4
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 26 7.4
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 26 7.4
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272... 26 9.8
04_03_0874 + 20467608-20468306,20468575-20468736,20470083-204701... 26 9.8
01_06_1139 + 34835430-34835883,34836377-34836855 26 9.8
>01_05_0194 - 19107143-19108055,19110864-19111132
Length = 393
Score = 29.5 bits (63), Expect = 0.79
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 124 DVNTDTLDLRKVRSPVKSVDNLQPSKVTITHEANQPEVIIPTNESKFEV--PILPEQCEF 297
+V +++L + S + Q VTIT E E P + +K + P P + EF
Sbjct: 223 EVACSSVELNQSASATDQENVSQKIVVTITSEKGMHETE-PVSANKIAICQPDFPSKAEF 281
Query: 298 PMDYSNLPPKKKRKLIE 348
P+ S + P +K KL++
Sbjct: 282 PVGSSFVTP-RKNKLVD 297
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 28.3 bits (60), Expect = 1.8
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 217 EANQPEVIIPTNESKFE-VPILPEQCE-FPMDYSNLPPKKKRKLIEYQ 354
E P V N K E +PI+ E E FP D + +PPK++ IE+Q
Sbjct: 494 EMGIPVVTKEKNSRKLEDIPIICEYPEVFPKDLTTMPPKRE---IEFQ 538
>02_01_0005 +
34436-34498,34578-35120,35566-35643,35823-35915,
36086-36181,36709-36762,36856-37059,37209-37360,
37365-37440,38185-38193,38577-38708,39042-39107,
39885-40184,40332-40640,40976-40996
Length = 731
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 166 PVK-SVDNLQPSKVTITHEANQPEVIIPTNESKFEVPILPEQCEFPMDYS 312
P+K D L V + +PEV+IPT+++K +V + P P D S
Sbjct: 41 PIKHDADRLPSPLVADLNGDGKPEVLIPTHDAKIQV-LQPHPRPSPDDAS 89
>09_03_0058 +
11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 193 PSKVTITHEANQPEVIIPTNESKFEVPILPEQCEFPMDYSN 315
P+ VT +H +P + T E K E + +C++PM S+
Sbjct: 252 PAAVTESHSRMEP-LSCTTPEMKMETDAVQLKCDWPMQQSD 291
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 160 RSPVKSVDNLQPSKVTITHEANQPEVIIPTNESKFEVP 273
+S V +V ++Q + + HEANQPE+I+ + + +P
Sbjct: 522 KSTVGTVTSVQAELMKL-HEANQPELIVDEPQIQEALP 558
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 26.2 bits (55), Expect = 7.4
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = -2
Query: 290 HCSGR---MGTSNLLSFVGIITSG*FASCVIVTFDGCKLSTLFTGDLTFLRSNVSVFTSL 120
HC G GTS SF+G+ +S F + D + T +T D F L
Sbjct: 158 HCGGSGPDWGTSQPNSFLGLFSSEFFLQTRLYKADAVNMET-YTTDEALEFMGFGKFQLL 216
Query: 119 IPILAGEYW*VYS 81
+ AG W V S
Sbjct: 217 VLAYAGMGWVVES 229
>02_05_0924 -
32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 129 KHRYVGSQKSQITSEKCR*FTTIKSNDHTRSESTRSNNT 245
+HR+VGS + S + T+ D SES+R+ T
Sbjct: 297 EHRHVGSTNFNLLSSRSHTIFTLNLIDLAGSESSRAETT 335
>06_03_0434 +
20725996-20726026,20726300-20726947,20727168-20727230,
20727300-20727458,20727750-20728247,20729068-20729321,
20729448-20729829,20729938-20730204,20730530-20730789
Length = 853
Score = 25.8 bits (54), Expect = 9.8
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +1
Query: 181 DNLQPSKVTITHEANQPEVIIPTNESKFEVPILPEQCEFPMDYSNLPPKKKRKLIEYQ 354
DN P E QPE T + + I ++ + Y+NL P ++ K E Q
Sbjct: 33 DNFAPPLGEFEQEMQQPESTRGTPQPEGTRAIEEKRSNYRARYANLTPNQRHKRRERQ 90
>04_03_0874 +
20467608-20468306,20468575-20468736,20470083-20470160,
20470636-20470714,20470809-20470954,20471064-20471132,
20471262-20471430,20471526-20471776
Length = 550
Score = 25.8 bits (54), Expect = 9.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +1
Query: 64 EPYNRGEYTYQYS--PANIGMSDVNTDTLDLR 153
E YNR + Y YS P NI NTD +R
Sbjct: 326 EMYNRPIHIYSYSTEPINIFQGSYNTDVPPIR 357
>01_06_1139 + 34835430-34835883,34836377-34836855
Length = 310
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 244 PTNESKFEVPILPEQCEFPMDYSNLPPK 327
PT+ F P P + P Y N+PP+
Sbjct: 230 PTSNPSFFTPQYPTRGPVPQTYINVPPR 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,316,465
Number of Sequences: 37544
Number of extensions: 145803
Number of successful extensions: 386
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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