Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C15
(354 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3) 27 3.3
SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3
SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83) 27 4.4
SB_7485| Best HMM Match : DUF1582 (HMM E-Value=2.7) 27 4.4
SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13) 27 5.8
SB_31536| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_30963| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
>SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3)
Length = 471
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 247 TNESKFEVPILPEQCEFPMDYSNLPPKKKRK 339
TNE+ E I + CE D +LP K+K+K
Sbjct: 273 TNETDNESSIKKKSCEDSEDEEHLPSKEKKK 303
>SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 27.5 bits (58), Expect = 3.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 218 SCVIVTFDGCKLSTLFTGDLTFLRSNVSVFTSLIPILAGE 99
SCV VT D C+LS G T + S + L+ +++G+
Sbjct: 424 SCVAVTSDNCRLS---VGYFTKIESGLVSMVPLVGLMSGD 460
>SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)
Length = 248
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 293 SHCSGRMGTSNLLSFVGIITSG*FASCVIVTFDGCKLSTLFTGDLT 156
++ SG GTS ++ +SG ++SC T GC +T F G T
Sbjct: 148 TYSSGYRGTSTTTAY----SSGSYSSCPSRTLSGCFPATSFGGTTT 189
>SB_7485| Best HMM Match : DUF1582 (HMM E-Value=2.7)
Length = 290
Score = 27.1 bits (57), Expect = 4.4
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +3
Query: 135 RYVGSQKSQITSEKCR*FTTIKSNDHTRSESTRSNNTYE*E*IRSPHSSGTMRISDGLQQ 314
R V +I ++ R T ++ +HTR+++T ++ E P G + +Q
Sbjct: 143 RNVNRLNPKIVRQRKRPVFTTEATEHTRNDNTDESDLATEEDPNGPGEHG-----EAVQI 197
Query: 315 LAAEKEKK 338
LA+EKEK+
Sbjct: 198 LASEKEKE 205
>SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/56 (26%), Positives = 21/56 (37%)
Frame = +1
Query: 139 TLDLRKVRSPVKSVDNLQPSKVTITHEANQPEVIIPTNESKFEVPILPEQCEFPMD 306
T D + P S Q + T ++ Q + + PILP FPMD
Sbjct: 724 TADTTTSKPPSSSTSIFQAAPATTSNTTTQIPAVASKLPDTTKPPILPANLVFPMD 779
>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
Length = 1287
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +1
Query: 148 LRKVRSPVKSVDNLQPSKVTITHEANQPEVIIPTNESKFEVPILPEQCE 294
L++++ + V+N++P T N E ++ ++ V +LP++ E
Sbjct: 450 LQQLQQQEEGVENVEPDAATAEDRENLTEAVVSNSKLLEHVHLLPDKNE 498
>SB_31536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 190 QPSKVTITHEANQPEVIIPTNESKFEVPI--LPEQCEFPMDYSNL 318
Q ++ T T+ QP+++ P S+ VP+ +P E P Y N+
Sbjct: 226 QQTQTTTTYPGQQPDMMHPPEGSRGYVPMKEVPGGTENPPPYPNI 270
>SB_30963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 109 NIGMSDVNTDTLDLRKVRSPVKSVDNLQ 192
++ +SD+N D +D V +P + DNLQ
Sbjct: 23 DLAVSDLNKDGIDDLAVSAPSEGADNLQ 50
>SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 151 RKVRSPVKSVDNLQPSKVTITHEANQP 231
R+ RSP+++V P K T H+ +P
Sbjct: 284 RRTRSPIQTVTTWAPQKKTTPHKPIEP 310
>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 26.2 bits (55), Expect = 7.7
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 11 SHDNISVELVDSKYDRELSRIIGVNILTNIH-QLISV*AT*TQIRWIS 151
S + SV L+ K+D R + VNI TN H + +SV T T R +S
Sbjct: 1072 SRPSSSVSLLIDKHDDPYCRQVSVNI-TNTHCRQVSVTITNTHCRQVS 1118
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 26.2 bits (55), Expect = 7.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 136 DTLDLRKVRSPVKSVDNLQPSKVTITHEANQPEVIIPTNESK 261
D L R RSP K+ ++ + V + ANQP V +P + K
Sbjct: 545 DALLNRLARSPSKTRPEVRAAVVKVLLLANQPVVTLPDHALK 586
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,279,131
Number of Sequences: 59808
Number of extensions: 189982
Number of successful extensions: 1178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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