Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_C15
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    29   0.93 
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U52003-2|AAY43981.1|  554|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical...    26   6.6  
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U49829-11|AAP40539.1|   93|Caenorhabditis elegans Uncoordinated ...    26   8.7  

>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
           protein F59F3.5 protein.
          Length = 1199

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 118 MSDVNTDTLDLRKVRSPVKSVDNLQPSKVTITHEANQPEVIIPTNESKF 264
           +SD   +++    V   V+ +D   P K TI HE N  E+IIP   +KF
Sbjct: 108 VSDEFKESMLQNTVHIFVRKLDIFVPLK-TIYHEHNGSEIIIPCKTTKF 155


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 184 NLQPSKV-TITHEANQPEVIIPTNESKFEVPILPEQCEFPMDYSNLPPKKKRKLI 345
           N+ PS V  I  +++    I PT     E+P L     F  D  N  PK  R  +
Sbjct: 356 NMMPSAVQVIDDDSSTRSGIFPTGYPNAELPPLVSTNSFAQDQGNCNPKFMRSTL 410


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 229 PEVIIPTNESKFEVPILPEQCE 294
           P V+  + +   EVP++PE CE
Sbjct: 28  PAVVAKSQDFILEVPVIPETCE 49


>U52003-2|AAY43981.1|  554|Caenorhabditis elegans Hypothetical
           protein ZK381.8 protein.
          Length = 554

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 242 YLRMRV-NSKSPFFRNNANFRW 304
           +LRM+  N+K+P+F  N N  W
Sbjct: 269 WLRMKFSNTKTPYFEPNENIEW 290


>AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical
           protein F33D4.6b protein.
          Length = 648

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +1

Query: 145 DLRKVRSPVKSVDNLQPSKVTITHEANQPEVIIPTNESKFEVPILPEQCEFPMDYSNLPP 324
           D+   +   K+V    P  +    E     ++   NE   E P+  E+     + +  PP
Sbjct: 346 DMHSRQFGAKTVQMSDPIDIQAQEEQEPVNILQKENEKVEEKPVEEEE-----EATTEPP 400

Query: 325 KKKRKL 342
           KKKRK+
Sbjct: 401 KKKRKM 406


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 235 VIIPTNESKFEVPILPEQCEFP 300
           VII  +E+ F+ PI+PE C+ P
Sbjct: 222 VIIEPSETVFKGPIVPEFCKRP 243


>U49829-11|AAP40539.1|   93|Caenorhabditis elegans Uncoordinated
           protein 18, isoform b protein.
          Length = 93

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 136 DTLDLRKVRSPVKSVDNLQPSKVTITHEANQPEVIIPTNESKFEVPILPEQCEFPMDYS 312
           DTL +R + S  K + N+    +TI  + N+    +PT E+ + +    E   F +  S
Sbjct: 34  DTLAMRMLSSCCK-MHNIMEEGITIVEDLNKRREPLPTLEAIYLIAPTAESVSFNLQKS 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,687,288
Number of Sequences: 27780
Number of extensions: 149578
Number of successful extensions: 445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)