Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_C15
(354 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 33 0.072
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein... 31 0.29
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ... 27 2.7
At1g79700.1 68414.m09295 ovule development protein, putative sim... 27 2.7
At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N domain-... 27 4.7
At5g20610.1 68418.m02448 expressed protein 26 6.3
At2g27350.5 68415.m03295 OTU-like cysteine protease family prote... 26 6.3
At2g27350.4 68415.m03294 OTU-like cysteine protease family prote... 26 6.3
At2g27350.3 68415.m03293 OTU-like cysteine protease family prote... 26 6.3
At2g27350.2 68415.m03292 OTU-like cysteine protease family prote... 26 6.3
At2g27350.1 68415.m03291 OTU-like cysteine protease family prote... 26 6.3
At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative si... 26 8.3
At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative si... 26 8.3
At2g07770.1 68415.m01005 hypothetical protein low similarity to ... 26 8.3
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 32.7 bits (71), Expect = 0.072
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +1
Query: 169 VKSVDNLQPSKVTITHEANQPEVIIPTNESKFEVPILPEQCEFPMDYSNLPPKKKRKLI 345
V++ + + SKV++ E + + +F +P+ PE+ EF +D L P+ +++
Sbjct: 155 VRTRSSSRVSKVSVKKEEPEDDSFSDYVNKEFSIPVKPEKIEFDLDLLTLEPQNVARVV 213
>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 595
Score = 30.7 bits (66), Expect = 0.29
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 111 YRYERRKHRYVGSQ-KSQITSEKCR*FTTIKSNDHTRSESTRSNNTYE 251
+RY+ R+HRYV + +++ SEK + S H RS + + YE
Sbjct: 492 HRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYE 539
>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425
Length = 695
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 223 NQPEVIIPTNESKFEVPI--LPEQCEFPMDYSNLPPKKKRKLIEYQ 354
NQP ++PTNES F + + +C +D+ +P K+K+ +++ Q
Sbjct: 248 NQPLAVLPTNESVFNLHRGGMRRRC---LDF-EMPGKRKKDIVDDQ 289
>At1g79700.1 68414.m09295 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099) [Arabidopsis thaliana]
Length = 303
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +1
Query: 94 QYSPANIGMSDVNTDTLDLRKV-RSPVKSVDNLQPSKVTITHEANQPEVIIPTNES 258
+Y N ++D+ +R R P S DN P + + PEV IPT S
Sbjct: 205 RYLNPNAAADKADSDSKPIRSPSREPESSDDNKSPKSEEVIEPSTSPEV-IPTRRS 259
>At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 646
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 100 SPANIGMSDVNTDTLDLRKVRSPVKSV-DNLQPSKVTITHEANQPEVIIP-TNESKFEVP 273
SP N+ + D+ + + K+ +K ++ + V + ++ E ++ T +F VP
Sbjct: 207 SPGNLKI-DITEELARITKMELQLKCTRQEIERAVVQAEGDLDRAEEVLKGTKYEEFSVP 265
Query: 274 ILPEQCEFPMDYSN 315
+ E+C P+ SN
Sbjct: 266 VKQEECGDPLTPSN 279
>At5g20610.1 68418.m02448 expressed protein
Length = 1164
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/68 (20%), Positives = 32/68 (47%)
Frame = +1
Query: 91 YQYSPANIGMSDVNTDTLDLRKVRSPVKSVDNLQPSKVTITHEANQPEVIIPTNESKFEV 270
Y +S N ++ + +++ + + +V + S V ++ E + P NES+FE
Sbjct: 268 YDHSIVNRESHPLSQNMEEIKDLHEILPAVQSDLGSSVNTLYQKFDEEKVDPANESQFEF 327
Query: 271 PILPEQCE 294
++ + E
Sbjct: 328 DVVTKHIE 335
>At2g27350.5 68415.m03295 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 388
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 64 EPYNRGEYTYQYS--PANIGMSDVNTDTLDLR 153
E YNR + Y YS P NI + +TDT +R
Sbjct: 293 EMYNRPIHIYSYSTEPINIFQGNYSTDTPPIR 324
>At2g27350.4 68415.m03294 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 388
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 64 EPYNRGEYTYQYS--PANIGMSDVNTDTLDLR 153
E YNR + Y YS P NI + +TDT +R
Sbjct: 293 EMYNRPIHIYSYSTEPINIFQGNYSTDTPPIR 324
>At2g27350.3 68415.m03293 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 506
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 64 EPYNRGEYTYQYS--PANIGMSDVNTDTLDLR 153
E YNR + Y YS P NI + +TDT +R
Sbjct: 293 EMYNRPIHIYSYSTEPINIFQGNYSTDTPPIR 324
>At2g27350.2 68415.m03292 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 64 EPYNRGEYTYQYS--PANIGMSDVNTDTLDLR 153
E YNR + Y YS P NI + +TDT +R
Sbjct: 293 EMYNRPIHIYSYSTEPINIFQGNYSTDTPPIR 324
>At2g27350.1 68415.m03291 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 64 EPYNRGEYTYQYS--PANIGMSDVNTDTLDLR 153
E YNR + Y YS P NI + +TDT +R
Sbjct: 293 EMYNRPIHIYSYSTEPINIFQGNYSTDTPPIR 324
>At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative
similar to aminoacyl-t-RNA synthetase GI:2654226 from
[Arabidopsis thaliana]; contains Pfam profiles: PF02092
glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA
synthetase alpha subunit
Length = 1063
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 282 GTMRISDGLQQLAAEKEKKIN 344
G RIS GL Q+ EK+K +N
Sbjct: 859 GLRRISYGLVQILVEKDKNVN 879
>At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative
similar to aminoacyl-t-RNA synthetase GI:2654226 from
[Arabidopsis thaliana]; contains Pfam profiles: PF02092
glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA
synthetase alpha subunit
Length = 1064
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 282 GTMRISDGLQQLAAEKEKKIN 344
G RIS GL Q+ EK+K +N
Sbjct: 859 GLRRISYGLVQILVEKDKNVN 879
>At2g07770.1 68415.m01005 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 518
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 220 ANQPEVIIPTNESKFEVPILPEQCEFPMDYSNLPPKKKR 336
A E+ +P +E EV ++ E P D P KKR
Sbjct: 428 AEPSEIGVPESEKDIEVADSEKEKEVPQDAKVAEPSKKR 466
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,081,956
Number of Sequences: 28952
Number of extensions: 130327
Number of successful extensions: 374
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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